RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 UHMK1Q8TAS1 419 aaKnown RBP14.21□□□□□ -0.13
PTPRF-215ENST00000496447 HDAC11Q96DB2 347 aa14.21□□□□□ -0.13
PTPRF-215ENST00000496447 PEX3P56589 373 aa14.21□□□□□ -0.13
PTPRF-215ENST00000496447 MAN1B1Q9UKM7 699 aa14.21□□□□□ -0.13
PTPRF-215ENST00000496447 CDHR2Q9BYE9 1310 aa14.21□□□□□ -0.14
PTPRF-215ENST00000496447 HOXD10P28358 340 aa14.21□□□□□ -0.14
PTPRF-215ENST00000496447 PDE1BQ01064 536 aa14.21□□□□□ -0.14
PTPRF-215ENST00000496447 SLITRK6Q9H5Y7 841 aa14.21□□□□□ -0.14
PTPRF-215ENST00000496447 SRPRBQ9Y5M8 271 aaKnown RBP14.21□□□□□ -0.14
PTPRF-215ENST00000496447 MCF2LO15068 1137 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 ATP6V0A4Q9HBG4 840 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 PDE11AQ9HCR9 933 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 SMYD2Q9NRG4 433 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 BCAP29Q9UHQ4 241 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 ANGPTL3Q9Y5C1 460 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 GPSM2P81274 684 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 OTUD5Q96G74 571 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 LMCD1Q9NZU5 365 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 MROH7-TTC4A0A0A0MT08 1334 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 HIP1RO75146 1068 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 RAPH1Q70E73 1250 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 FAM133AQ8N9E0 248 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 MAGOHBQ96A72 148 aaKnown RBP14.2□□□□□ -0.14
PTPRF-215ENST00000496447 FAM114A2Q9NRY5 505 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 UTYO14607 1347 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 WDR64B1ANS9 1081 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 CCT5P48643 541 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 E2F4Q16254 413 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 TMTC3Q6ZXV5 915 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 THNSL1Q8IYQ7 743 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 NSUN6Q8TEA1 469 aaKnown RBP14.2□□□□□ -0.14
PTPRF-215ENST00000496447 TMEM47Q9BQJ4 181 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 RWDD2AQ9UIY3 292 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 IGKV5-2P06315 115 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 EPHA10Q5JZY3 1008 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 DNAAF3Q8N9W5 541 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 OR6B3Q8NGW1 331 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 UBN1Q9NPG3 1134 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 RNF146Q9NTX7 359 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 POLIQ9UNA4 740 aa14.2□□□□□ -0.14
PTPRF-215ENST00000496447 KDM6BO15054 1643 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 SNAP23O00161 211 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 PRPSAP2O60256 369 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 CYP2E1P05181 493 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-215ENST00000496447 INHBAP08476 426 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 SPP2Q13103 211 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 KCTD6Q8NC69 237 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 N4BP2L2Q92802 583 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-215ENST00000496447 TTC1Q99614 292 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 INPP5FQ9Y2H2 1132 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 IQCA1LA6NCM1 817 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 CCNE1P24864 410 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 DYNLT1P63172 113 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 ARHGAP4P98171 946 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 DBN1Q16643 649 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 ARL6IP4Q66PJ3 421 aaKnown RBP14.19□□□□□ -0.14
PTPRF-215ENST00000496447 RCSD1Q6JBY9 416 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 CALN1Q9BXU9 219 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 CASQ2O14958 399 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-215ENST00000496447 KCNQ2O43526 872 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 LDHAP00338 332 aaKnown RBP14.19□□□□□ -0.14
PTPRF-215ENST00000496447 HOXA7P31268 230 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-215ENST00000496447 ARHGEF18Q6ZSZ5 1173 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.19□□□□□ -0.14
PTPRF-215ENST00000496447 AIFM3Q96NN9 605 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 CPDO75976 1380 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 RBL2Q08999 1139 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 NKX1-1Q15270 411 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-215ENST00000496447 DPCR1Q3MIW9 517 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 MCUQ8NE86 351 aa14.19□□□□□ -0.14
PTPRF-215ENST00000496447 RAB44Q7Z6P3 723 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-215ENST00000496447 THEM5Q8N1Q8 247 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 CHD1O14646 1710 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 DENND3A2RUS2 1198 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 SMIM24O75264 130 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 APBA1Q02410 837 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 TTLL4Q14679 1199 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 DCLK2Q8N568 766 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 PIGOQ8TEQ8 1089 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 MMP19Q99542 508 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 KLHL14Q9P2G3 628 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 ABCB11O95342 1321 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 CPP00450 1065 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 PHKA2P46019 1235 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 RASSF2P50749 326 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 PRELPP51888 382 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 EPHB1P54762 984 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 MYLK4Q86YV6 388 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-215ENST00000496447 THAP9Q9H5L6 903 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 TOPORSQ9NS56 1045 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-215ENST00000496447 MAGED2Q9UNF1 606 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-215ENST00000496447 ARL13BQ3SXY8 428 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 SGO2Q562F6 1265 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 TWF2Q6IBS0 349 aaKnown RBP14.18□□□□□ -0.14
PTPRF-215ENST00000496447 DARS2Q6PI48 645 aaKnown RBP14.18□□□□□ -0.14
PTPRF-215ENST00000496447 SP8Q8IXZ3 490 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 GANCQ8TET4 914 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 TACO1Q9BSH4 297 aaKnown RBP14.18□□□□□ -0.14
PTPRF-215ENST00000496447 TBC1D22BQ9NU19 505 aa14.18□□□□□ -0.14
PTPRF-215ENST00000496447 FNDC3AQ9Y2H6 1198 aaKnown RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms