RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 GANQ9H2C0 597 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 INTUQ9ULD6 942 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 ASAP1Q9ULH1 1129 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 C15orf41Q9Y2V0 281 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 UTP11Q9Y3A2 253 aaKnown RBP10.58□□□□□ -0.72
SYNE1-230ENST00000495090 CCDC88AQ3V6T2 1871 aa10.58□□□□□ -0.72
SYNE1-230ENST00000495090 AFF2P51816 1311 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 KRIT1O00522 736 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 LIN7AO14910 233 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-230ENST00000495090 CCNT1O60563 726 aaKnown RBP10.57□□□□□ -0.72
SYNE1-230ENST00000495090 CTNND1O60716 968 aaKnown RBP10.57□□□□□ -0.72
SYNE1-230ENST00000495090 ZPR1O75312 459 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 GNA11P29992 359 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 TECP42680 631 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 MMP13P45452 471 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 DNA2P51530 1060 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 UBE4AQ14139 1066 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 PPP2R5AQ15172 486 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 PPP1R7Q15435 360 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 EP400NLQ6ZTU2 488 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 HEATR3Q7Z4Q2 680 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 METTL13Q8N6R0 699 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 ATXN2LQ8WWM7 1075 aaKnown RBP10.57□□□□□ -0.72
SYNE1-230ENST00000495090 RAD54LQ92698 747 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 FAM212AQ96EL1 285 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 NSRP1Q9H0G5 558 aaKnown RBP10.57□□□□□ -0.72
SYNE1-230ENST00000495090 RAB17Q9H0T7 212 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 KCNMB3Q9NPA1 279 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 ADAMTS1Q9UHI8 967 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 NENFQ9UMX5 172 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 STXBP5LQ9Y2K9 1186 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 DIS3Q9Y2L1 958 aaKnown RBP10.57□□□□□ -0.72
SYNE1-230ENST00000495090 MYH7BA7E2Y1 1941 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 MAST2Q6P0Q8 1798 aa10.57□□□□□ -0.72
SYNE1-230ENST00000495090 BAZ2BQ9UIF8 2168 aaKnown RBP10.56□□□□□ -0.72
SYNE1-230ENST00000495090 DCDC2CA8MYV0 355 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 DAPK3O43293 454 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 ADAMTS2O95450 1211 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 FLT3P36888 993 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 PRKCIP41743 596 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 RNASE9P60153 205 aaKnown RBP10.56□□□□□ -0.72
SYNE1-230ENST00000495090 POU5F1Q01860 360 aaKnown RBP10.56□□□□□ -0.72
SYNE1-230ENST00000495090 LMNB2Q03252 620 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 DHX9Q08211 1270 aaKnown RBP10.56□□□□□ -0.72
SYNE1-230ENST00000495090 RAPGEF1Q13905 1077 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 PDIA5Q14554 519 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 NAA25Q14CX7 972 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 CLUL1Q15846 466 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 LETM2Q2VYF4 491 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 TMEM119Q4V9L6 283 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 DDX42Q86XP3 938 aaKnown RBP eCLIP10.56□□□□□ -0.72
SYNE1-230ENST00000495090 TPCN2Q8NHX9 752 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 ZNF384Q8TF68 577 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 PIGBQ92521 554 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 L3MBTL3Q96JM7 780 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-230ENST00000495090 ANKRD27Q96NW4 1050 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 PNMA5Q96PV4 448 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 MTMR9Q96QG7 549 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 FMO2Q99518 471 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.56□□□□□ -0.72
SYNE1-230ENST00000495090 SPZ1Q9BXG8 430 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 PACSIN1Q9BY11 444 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 RAB34Q9BZG1 259 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 C6orf50Q9HD87 102 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 NOP53Q9NZM5 478 aaKnown RBP10.56□□□□□ -0.72
SYNE1-230ENST00000495090 SAMD15Q9P1V8 674 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 BAIAP2L1Q9UHR4 511 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 GOLGA6L10A0A0M3HER8 536 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 ESYT2A0FGR8 921 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 PALM3A6NDB9 673 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-230ENST00000495090 CCDC169A6NNP5 214 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 CYTH3O43739 400 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 NPM3O75607 178 aaKnown RBP10.56□□□□□ -0.72
SYNE1-230ENST00000495090 MMEP08473 750 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 ZNF131P52739 623 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 TMEM266Q2M3C6 531 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 SLC35G1Q2M3R5 365 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 PARP10Q53GL7 1025 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 TRPM8Q7Z2W7 1104 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 GBP7Q8N8V2 638 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-230ENST00000495090 NSMCE1Q8WV22 266 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 CDK5RAP3Q96JB5 506 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 TMEM109Q9BVC6 243 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 DDX47Q9H0S4 455 aaKnown RBP10.56□□□□□ -0.72
SYNE1-230ENST00000495090 ZBTB1Q9Y2K1 713 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.56□□□□□ -0.72
SYNE1-230ENST00000495090 ROBO3Q96MS0 1386 aa10.56□□□□□ -0.72
SYNE1-230ENST00000495090 FAM187AA6NFU0 413 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 FLOT1O75955 427 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 AGTP01019 485 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 CHN1P15882 459 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 ATF3P18847 181 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 SMARCA1P28370 1054 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 GBP1P32455 592 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 DRG2P55039 364 aaKnown RBP10.55□□□□□ -0.72
SYNE1-230ENST00000495090 ACCSLQ4AC99 568 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 SUSD4Q5VX71 490 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 IRF2BP2Q7Z5L9 587 aa10.55□□□□□ -0.72
SYNE1-230ENST00000495090 COL23A1Q86Y22 540 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-230ENST00000495090 FAM133AQ8N9E0 248 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms