RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 EMILIN3Q9NT22 766 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 RBM12Q9NTZ6 932 aaKnown RBP18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 PSD3Q9NYI0 1048 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 RGL1Q9NZL6 768 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 PDCLQ13371 301 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 FIGNQ5HY92 759 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 SYDE2Q5VT97 1194 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 PAPD7Q5XG87 772 aaKnown RBP18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 TATDN1Q6P1N9 297 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 TMEM179Q6ZVK1 233 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 CCDC84Q86UT8 332 aaPredicted RBP18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 CREG2Q8IUH2 290 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 CCDC65Q8IXS2 484 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 ETNPPLQ8TBG4 499 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 ACER1Q8TDN7 264 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 IDI2Q9BXS1 227 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 SPDYE3A6NKU9 549 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 CHMP2AO43633 222 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 MAGEA1P43355 309 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 SLC12A3P55017 1021 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 GNGT1P63211 74 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 SPIRE1Q08AE8 756 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 FAM76AQ8TAV0 307 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 LENG9Q96B70 501 aa18.19■□□□□ 0.5
CCDC88B-210ENST00000494566 ZC3H4Q9UPT8 1303 aaKnown RBP18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 KDM3AQ9Y4C1 1321 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 YDJCA8MPS7 323 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 ZBTB39O15060 712 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 IVLP07476 585 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 FAM153BP0C7A2 387 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 POLD1P28340 1107 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 PSMD2Q13200 908 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 FAM153CQ494X1 144 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 MAP9Q49MG5 647 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 CCDC174Q6PII3 467 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 SPATA4Q8NEY3 305 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 FAM153AQ9UHL3 310 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 C21orf2O43822 256 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 NOL4O94818 638 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 FGFR1OPO95684 399 aaKnown RBP18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 BMP3P12645 472 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 ACTN1P12814 892 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 TUBB2AQ13885 445 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 SFR1Q86XK3 245 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 BCAS4Q8TDM0 211 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 REEP2Q9BRK0 252 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 TUBB2BQ9BVA1 445 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 LRRC27Q9C0I9 530 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 NFU1Q9UMS0 254 aa18.18■□□□□ 0.5
CCDC88B-210ENST00000494566 BACH1O14867 736 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 TLR2O60603 784 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 CFBP00751 764 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 SPATA31C1P0DKV0 1188 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 MYBP10242 640 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 USP11P51784 963 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 KCNA1Q09470 495 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 ADAM9Q13443 819 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 PDXDC1Q6P996 788 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 KLHL7Q8IXQ5 586 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 PIGOQ8TEQ8 1089 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 OSBPL9Q96SU4 736 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 MED4Q9NPJ6 270 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 SNX12Q9UMY4 172 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 EML1O00423 815 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 MSH4O15457 936 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 TACC1O75410 805 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 ZNF76P36508 570 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 CKAP4Q07065 602 aaKnown RBP18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 HYIQ5T013 277 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 RBM26Q5T8P6 1007 aaKnown RBP18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 KCTD10Q9H3F6 313 aa18.17■□□□□ 0.5
CCDC88B-210ENST00000494566 RAD17O75943 681 aa18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 CARSP49589 748 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 FAM83BQ5T0W9 1011 aa18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 PACSIN1Q9BY11 444 aa18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 BHMT2Q9H2M3 363 aa18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 SH2D4AQ9H788 454 aa18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 ZBTB12Q9Y330 459 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 PPIP5K2O43314 1243 aa18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 NR2F2P24468 414 aa18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 RAPGEF1Q13905 1077 aa18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 HGSNATQ68CP4 663 aa18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 CRYGNQ8WXF5 182 aa18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 PURBQ96QR8 312 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 RUFY1Q96T51 708 aa18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 PRR12Q9ULL5 1215 aa18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 GUCY2DQ02846 1103 aa18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 GIT2Q14161 759 aa18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 CTTNQ14247 550 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 TTC31Q49AM3 519 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 RUSC1Q9BVN2 902 aa18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 PDGFDQ9GZP0 370 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-210ENST00000494566 CLIC2O15247 247 aa18.15■□□□□ 0.5
CCDC88B-210ENST00000494566 USO1O60763 962 aaKnown RBP18.15■□□□□ 0.5
CCDC88B-210ENST00000494566 HNRNPH3P31942 346 aaKnown RBP18.15■□□□□ 0.5
CCDC88B-210ENST00000494566 MIGA2Q7L4E1 593 aa18.15■□□□□ 0.5
CCDC88B-210ENST00000494566 KSR1Q8IVT5 923 aa18.15■□□□□ 0.5
CCDC88B-210ENST00000494566 FAM133AQ8N9E0 248 aa18.15■□□□□ 0.5
CCDC88B-210ENST00000494566 EHBP1Q8NDI1 1231 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms