RNA–Protein interactions for RNA: ENST00000493430.5

PTCD3-218, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 782 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-218ENST00000493430 ZNF623O75123 536 aa5.07□□□□□ -1.6
PTCD3-218ENST00000493430 SOD2P04179 222 aa5.07□□□□□ -1.6
PTCD3-218ENST00000493430 C6P13671 934 aa5.07□□□□□ -1.6
PTCD3-218ENST00000493430 TACR2P21452 398 aa5.07□□□□□ -1.6
PTCD3-218ENST00000493430 GDF5P43026 501 aa5.07□□□□□ -1.6
PTCD3-218ENST00000493430 SELENOPP49908 381 aa5.07□□□□□ -1.6
PTCD3-218ENST00000493430 EPHA5P54756 1037 aa5.07□□□□□ -1.6
PTCD3-218ENST00000493430 CD276Q5ZPR3 534 aa5.07□□□□□ -1.6
PTCD3-218ENST00000493430 KCTD1Q719H9 257 aa5.07□□□□□ -1.6
PTCD3-218ENST00000493430 PALM2Q8IXS6 379 aa5.07□□□□□ -1.6
PTCD3-218ENST00000493430 LRRC47Q8N1G4 583 aaKnown RBP5.07□□□□□ -1.6
PTCD3-218ENST00000493430 STPG3Q8N7X2 389 aa5.07□□□□□ -1.6
PTCD3-218ENST00000493430 AJUBAQ96IF1 538 aa5.07□□□□□ -1.6
PTCD3-218ENST00000493430 ALG1Q9BT22 464 aa5.07□□□□□ -1.6
PTCD3-218ENST00000493430 MEGF9Q9H1U4 602 aa5.07□□□□□ -1.6
PTCD3-218ENST00000493430 TELO2Q9Y4R8 837 aa5.07□□□□□ -1.6
PTCD3-218ENST00000493430 ERCC6L2Q5T890 1561 aa5.07□□□□□ -1.6
PTCD3-218ENST00000493430 AQRO60306 1485 aaKnown RBP eCLIP5.07□□□□□ -1.66e-9■■■■□ 23.5
PTCD3-218ENST00000493430 BLACEA4D250 179 aa5.06□□□□□ -1.6
PTCD3-218ENST00000493430 H0Y858 1186 aa5.06□□□□□ -1.6
PTCD3-218ENST00000493430 IFNL2Q8IZJ0 200 aa5.06□□□□□ -1.6
PTCD3-218ENST00000493430 WWC2-AS2Q96NR7 200 aa5.06□□□□□ -1.6
PTCD3-218ENST00000493430 SORCS2Q96PQ0 1159 aa5.06□□□□□ -1.6
PTCD3-218ENST00000493430 KCND1Q9NSA2 647 aa5.06□□□□□ -1.6
PTCD3-218ENST00000493430 SLC4A7Q9Y6M7 1214 aa5.06□□□□□ -1.6
PTCD3-218ENST00000493430 ZNF839A8K0R7 811 aa5.05□□□□□ -1.6
PTCD3-218ENST00000493430 MUSKO15146 869 aa5.05□□□□□ -1.6
PTCD3-218ENST00000493430 CNOT4O95628 575 aaKnown RBP5.05□□□□□ -1.6
PTCD3-218ENST00000493430 CSF2RBP32927 897 aa5.05□□□□□ -1.6
PTCD3-218ENST00000493430 RAB33AQ14088 237 aa5.05□□□□□ -1.6
PTCD3-218ENST00000493430 HS1BP3Q53T59 392 aa5.05□□□□□ -1.6
PTCD3-218ENST00000493430 YOD1Q5VVQ6 348 aaPredicted RBP5.05□□□□□ -1.6
PTCD3-218ENST00000493430 CRIP3Q6Q6R5 217 aa5.05□□□□□ -1.6
PTCD3-218ENST00000493430 REXO1L1PQ8IX06 675 aa5.05□□□□□ -1.6
PTCD3-218ENST00000493430 Q8TCH9 128 aa5.05□□□□□ -1.6
PTCD3-218ENST00000493430 ZNF669Q96BR6 464 aaPredicted RBP5.05□□□□□ -1.6
PTCD3-218ENST00000493430 LMF1Q96S06 567 aa5.05□□□□□ -1.6
PTCD3-218ENST00000493430 KATNBL1Q9H079 304 aa5.05□□□□□ -1.6
PTCD3-218ENST00000493430 IPPKQ9H8X2 491 aa5.05□□□□□ -1.6
PTCD3-218ENST00000493430 TESMINQ9Y4I5 508 aa5.05□□□□□ -1.6
PTCD3-218ENST00000493430 ACOT7O00154 380 aa5.04□□□□□ -1.6
PTCD3-218ENST00000493430 FZD7O75084 574 aa5.04□□□□□ -1.6
PTCD3-218ENST00000493430 AMHP03971 560 aa5.04□□□□□ -1.6
PTCD3-218ENST00000493430 USP10Q14694 798 aaKnown RBP5.04□□□□□ -1.6
PTCD3-218ENST00000493430 R3HDM1Q15032 1099 aaKnown RBP5.04□□□□□ -1.6
PTCD3-218ENST00000493430 DPP8Q6V1X1 898 aaPredicted RBP5.04□□□□□ -1.6
PTCD3-218ENST00000493430 USP51Q70EK9 711 aa5.04□□□□□ -1.6
PTCD3-218ENST00000493430 NLGN4XQ8N0W4 816 aa5.04□□□□□ -1.6
PTCD3-218ENST00000493430 GNRHR2Q96P88 292 aa5.04□□□□□ -1.6
PTCD3-218ENST00000493430 TACO1Q9BSH4 297 aaKnown RBP5.04□□□□□ -1.6
PTCD3-218ENST00000493430 ZNF747Q9BV97 191 aa5.04□□□□□ -1.6
PTCD3-218ENST00000493430 TRIM55Q9BYV6 548 aa5.04□□□□□ -1.6
PTCD3-218ENST00000493430 VPS11Q9H270 941 aa5.04□□□□□ -1.6
PTCD3-218ENST00000493430 CCDC9Q9Y3X0 531 aaKnown RBP5.04□□□□□ -1.6
PTCD3-218ENST00000493430 SNAPC4Q5SXM2 1469 aa5.04□□□□□ -1.6
PTCD3-218ENST00000493430 KIF13AQ9H1H9 1805 aa5.04□□□□□ -1.6
PTCD3-218ENST00000493430 ADAMTS12P58397 1594 aa5.04□□□□□ -1.6
PTCD3-218ENST00000493430 ARHGEF11O15085 1522 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 IFT140Q96RY7 1462 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 CYR61O00622 381 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 IL18BPO95998 194 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 DBPQ10586 325 aaPredicted RBP5.03□□□□□ -1.6
PTCD3-218ENST00000493430 PAK1Q13153 545 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 ZNF568Q3ZCX4 644 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 BTBD8Q5XKL5 378 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 GPR155Q7Z3F1 870 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 SCUBE1Q8IWY4 988 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 Q8N1X5 172 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 GIMAP8Q8ND71 665 aaPredicted RBP5.03□□□□□ -1.6
PTCD3-218ENST00000493430 LRRC37BQ96QE4 947 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 SPATA9Q9BWV2 254 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 CARD11Q9BXL7 1154 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 CD244Q9BZW8 370 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 SCAND2PQ9GZW5 306 aaPredicted RBP5.03□□□□□ -1.6
PTCD3-218ENST00000493430 TOP2BQ02880 1626 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 ASXL2Q76L83 1435 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 CEP170Q5SW79 1584 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 TSPOAP1O95153 1857 aa5.03□□□□□ -1.6
PTCD3-218ENST00000493430 CLASP1Q7Z460 1538 aa5.02□□□□□ -1.61
PTCD3-218ENST00000493430 AQP7O14520 342 aa5.02□□□□□ -1.61
PTCD3-218ENST00000493430 U2SURPO15042 1029 aaKnown RBP5.02□□□□□ -1.61
PTCD3-218ENST00000493430 FOXS1O43638 330 aa5.02□□□□□ -1.61
PTCD3-218ENST00000493430 CUTAO60888 179 aa5.02□□□□□ -1.61
PTCD3-218ENST00000493430 POLD1P28340 1107 aa5.02□□□□□ -1.61
PTCD3-218ENST00000493430 ACVRL1P37023 503 aa5.02□□□□□ -1.61
PTCD3-218ENST00000493430 HMGA2P52926 109 aa5.02□□□□□ -1.61
PTCD3-218ENST00000493430 SPDYAQ5MJ70 313 aa5.02□□□□□ -1.61
PTCD3-218ENST00000493430 TCTN3Q6NUS6 607 aa5.02□□□□□ -1.61
PTCD3-218ENST00000493430 ARHGAP36Q6ZRI8 547 aa5.02□□□□□ -1.61
PTCD3-218ENST00000493430 EP400NLQ6ZTU2 488 aa5.02□□□□□ -1.61
PTCD3-218ENST00000493430 SH3RF2Q8TEC5 729 aa5.02□□□□□ -1.61
PTCD3-218ENST00000493430 NEIL1Q96FI4 390 aaPredicted RBP5.02□□□□□ -1.61
PTCD3-218ENST00000493430 IPO9Q96P70 1041 aaKnown RBP5.02□□□□□ -1.61
PTCD3-218ENST00000493430 SLC39A2Q9NP94 309 aa5.02□□□□□ -1.61
PTCD3-218ENST00000493430 CATSPERZQ9NTU4 200 aa5.02□□□□□ -1.61
PTCD3-218ENST00000493430 TRAF6Q9Y4K3 522 aa5.02□□□□□ -1.61
PTCD3-218ENST00000493430 TCRBV5S4A2TA0A5A2 114 aa5.01□□□□□ -1.61
PTCD3-218ENST00000493430 ESYT3A0FGR9 886 aa5.01□□□□□ -1.61
PTCD3-218ENST00000493430 SUV39H1O43463 412 aa5.01□□□□□ -1.61
PTCD3-218ENST00000493430 ZNF888P0CJ79 500 aaPredicted RBP5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms