RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 KRT3P12035 628 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 DYNLT1P63172 113 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 HIBCHQ6NVY1 386 aaPredicted RBP17.74■□□□□ 0.43
COL7A1-210ENST00000487017 NLGN1Q8N2Q7 840 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 PDCD7Q8N8D1 485 aaKnown RBP17.74■□□□□ 0.43
COL7A1-210ENST00000487017 NPHP4O75161 1426 aaPredicted RBP17.74■□□□□ 0.43
COL7A1-210ENST00000487017 SYNJ2BP-COX16A0A087WUM0 186 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 CDC27P30260 824 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 GGCXP38435 758 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 BASP1P80723 227 aaKnown RBP17.74■□□□□ 0.43
COL7A1-210ENST00000487017 RSPH3Q86UC2 560 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 TRIM4Q9C037 500 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 COX16Q9P0S2 106 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 TPX2Q9ULW0 747 aaKnown RBP17.74■□□□□ 0.43
COL7A1-210ENST00000487017 PODXLO00592 558 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 GUCY2CP25092 1073 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 TSGA10IPQ3SY00 556 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 C4orf50Q6ZRC1 276 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 SESTD1Q86VW0 696 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 HVCN1Q96D96 273 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 MAGEA9P43362 315 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 PDCLQ13371 301 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 BHMT2Q9H2M3 363 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 GLI2P10070 1586 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 CLRN2A0PK11 232 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 MED7O43513 233 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 GPC4O75487 556 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 SERPINB2P05120 415 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 IGBP1P78318 339 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 JPH2Q9BR39 696 aaPredicted RBP17.73■□□□□ 0.43
COL7A1-210ENST00000487017 SLC5A4Q9NY91 659 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 UBN2Q6ZU65 1347 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 CTTNQ14247 550 aaKnown RBP17.73■□□□□ 0.43
COL7A1-210ENST00000487017 FAM47CQ5HY64 1035 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 CC2D2BQ6DHV5 1058 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 PI4KBQ9UBF8 816 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 LRRC7Q96NW7 1537 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 MYO1CO00159 1063 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 CNGA1P29973 690 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 DARS2Q6PI48 645 aaKnown RBP17.73■□□□□ 0.43
COL7A1-210ENST00000487017 GADL1Q6ZQY3 521 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 NLRP7Q8WX94 980 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 DACT3Q96B18 629 aaPredicted RBP17.73■□□□□ 0.43
COL7A1-210ENST00000487017 LRGUKQ96M69 825 aa17.73■□□□□ 0.43
COL7A1-210ENST00000487017 RAPH1Q70E73 1250 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 IPO11Q9UI26 975 aaKnown RBP17.72■□□□□ 0.43
COL7A1-210ENST00000487017 MRFAP1Q9Y605 127 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 PVALEFA0A1B0GWK0 134 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 COG7P83436 770 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 RPAINQ86UA6 219 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 FBXO41Q8TF61 875 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 ACTN1P12814 892 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 CCND2P30279 289 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 AP3B2Q13367 1082 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 RAD54LQ92698 747 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 MXD3Q9BW11 206 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 CCDC68Q9H2F9 335 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 MORC2Q9Y6X9 1032 aaPredicted RBP17.72■□□□□ 0.43
COL7A1-210ENST00000487017 SMIM24O75264 130 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 USP14P54578 494 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 NAA30Q147X3 362 aaPredicted RBP17.72■□□□□ 0.43
COL7A1-210ENST00000487017 JADE1Q6IE81 842 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 ENAHQ8N8S7 591 aaPredicted RBP17.72■□□□□ 0.43
COL7A1-210ENST00000487017 KCTD6Q8NC69 237 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 PPME1Q9Y570 386 aa17.72■□□□□ 0.43
COL7A1-210ENST00000487017 ZCCHC11Q5TAX3 1644 aaKnown RBP17.72■□□□□ 0.43
COL7A1-210ENST00000487017 PFDN6O15212 129 aa17.71■□□□□ 0.43
COL7A1-210ENST00000487017 ALX1Q15699 326 aa17.71■□□□□ 0.43
COL7A1-210ENST00000487017 SHC4Q6S5L8 630 aa17.71■□□□□ 0.43
COL7A1-210ENST00000487017 GFPT1Q06210 699 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-210ENST00000487017 CDHR1Q96JP9 859 aa17.71■□□□□ 0.43
COL7A1-210ENST00000487017 SMYD2Q9NRG4 433 aa17.71■□□□□ 0.43
COL7A1-210ENST00000487017 DNAJC12Q9UKB3 198 aa17.71■□□□□ 0.43
COL7A1-210ENST00000487017 HLFQ16534 295 aa17.71■□□□□ 0.43
COL7A1-210ENST00000487017 HSP90AA5PQ58FG0 334 aa17.71■□□□□ 0.43
COL7A1-210ENST00000487017 SYNGAP1Q96PV0 1343 aa17.71■□□□□ 0.43
COL7A1-210ENST00000487017 CDC42BPBQ9Y5S2 1711 aa17.71■□□□□ 0.43
COL7A1-210ENST00000487017 PALM3A6NDB9 673 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-210ENST00000487017 MIF4GDA9UHW6 222 aaKnown RBP17.71■□□□□ 0.43
COL7A1-210ENST00000487017 TEX33O43247 280 aa17.71■□□□□ 0.43
COL7A1-210ENST00000487017 LPXNO60711 386 aa17.71■□□□□ 0.43
COL7A1-210ENST00000487017 TMED8Q6PL24 325 aaPredicted RBP17.71■□□□□ 0.43
COL7A1-210ENST00000487017 TADA2BQ86TJ2 420 aa17.71■□□□□ 0.43
COL7A1-210ENST00000487017 DCLK2Q8N568 766 aa17.71■□□□□ 0.43
COL7A1-210ENST00000487017 POTEMA6NI47 508 aa17.71■□□□□ 0.42
COL7A1-210ENST00000487017 KIF28PB7ZC32 967 aa17.71■□□□□ 0.42
COL7A1-210ENST00000487017 ACSL3O95573 720 aa17.71■□□□□ 0.42
COL7A1-210ENST00000487017 SRGAP2BP0DMP2 458 aa17.71■□□□□ 0.42
COL7A1-210ENST00000487017 CYP2D6P10635 497 aa17.71■□□□□ 0.42
COL7A1-210ENST00000487017 PLS3P13797 630 aa17.71■□□□□ 0.42
COL7A1-210ENST00000487017 GRAPQ13588 217 aa17.71■□□□□ 0.42
COL7A1-210ENST00000487017 TAF11Q15544 211 aa17.71■□□□□ 0.42
COL7A1-210ENST00000487017 EP400NLQ6ZTU2 488 aa17.71■□□□□ 0.42
COL7A1-210ENST00000487017 GRAPLQ8TC17 118 aaPredicted RBP17.71■□□□□ 0.42
COL7A1-210ENST00000487017 HDAC11Q96DB2 347 aa17.71■□□□□ 0.42
COL7A1-210ENST00000487017 NUGGCQ68CJ6 796 aa17.7■□□□□ 0.42
COL7A1-210ENST00000487017 CENPUQ71F23 418 aa17.7■□□□□ 0.42
COL7A1-210ENST00000487017 SH3RF3Q8TEJ3 882 aaPredicted RBP17.7■□□□□ 0.42
COL7A1-210ENST00000487017 OSBPL9Q96SU4 736 aa17.7■□□□□ 0.42
COL7A1-210ENST00000487017 CALN1Q9BXU9 219 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms