RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 RNF187Q5TA31 235 aaPredicted RBP13.36□□□□□ -0.27
COL3A1-206ENST00000487010 C6orf89Q6UWU4 347 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 TPTE2Q6XPS3 522 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 SRP68Q9UHB9 627 aaKnown RBP13.36□□□□□ -0.27
COL3A1-206ENST00000487010 BZW2Q9Y6E2 419 aaKnown RBP13.36□□□□□ -0.27
COL3A1-206ENST00000487010 ZNF831Q5JPB2 1677 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 NHSQ6T4R5 1651 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 MYH7BA7E2Y1 1941 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 NPHP3-ACAD11A0A0J9YXS1 232 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 CETN3O15182 167 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 ACTN1P12814 892 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 ZNF844Q08AG5 666 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 IFT88Q13099 833 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 BIRC3Q13489 604 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 EDRF1Q3B7T1 1238 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 PPP1R18Q6NYC8 613 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 PPP4R3CPQ6ZMV5 832 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 ZNF804AQ7Z570 1209 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 SLC51AQ86UW1 340 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 DDX42Q86XP3 938 aaKnown RBP eCLIP13.36□□□□□ -0.27
COL3A1-206ENST00000487010 OR2W6PQ8NHA6 318 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 CYFIP2Q96F07 1278 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 CENPHQ9H3R5 247 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 VCPKMTQ9H867 229 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 PPANQ9NQ55 473 aaKnown RBP13.36□□□□□ -0.27
COL3A1-206ENST00000487010 NARFQ9UHQ1 456 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 NAGPAQ9UK23 515 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 KIAA1024Q9UPX6 916 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 NRAPQ86VF7 1730 aa13.36□□□□□ -0.27
COL3A1-206ENST00000487010 PNMA6FA0A0J9YX94 578 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 GMNCA6NCL1 334 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 PGRMC1O00264 195 aaKnown RBP13.35□□□□□ -0.27
COL3A1-206ENST00000487010 SART1O43290 800 aaKnown RBP13.35□□□□□ -0.27
COL3A1-206ENST00000487010 SNHG28P0DPA3 235 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 SLC9A1P19634 815 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 CTNNA1P35221 906 aaKnown RBP13.35□□□□□ -0.27
COL3A1-206ENST00000487010 GSCP56915 257 aaPredicted RBP13.35□□□□□ -0.27
COL3A1-206ENST00000487010 SETQ01105 290 aaPredicted RBP13.35□□□□□ -0.27
COL3A1-206ENST00000487010 DRP2Q13474 957 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 PLCB4Q15147 1175 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 RUFY4Q6ZNE9 571 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 GPBP1Q86WP2 473 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 METTL13Q8N6R0 699 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 C3orf20Q8ND61 904 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 MYCBPQ99417 103 aaPredicted RBP13.35□□□□□ -0.27
COL3A1-206ENST00000487010 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.35□□□□□ -0.27
COL3A1-206ENST00000487010 AP1M1Q9BXS5 423 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 NEUROG2Q9H2A3 272 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 GOLPH3Q9H4A6 298 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 GPCPD1Q9NPB8 672 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 MTMR4Q9NYA4 1195 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 SLC12A6Q9UHW9 1150 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 HDAC9Q9UKV0 1011 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 CNTNAP4Q9C0A0 1308 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 CCDC188H7C350 402 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 UCHL3P15374 230 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 GCFC2P16383 781 aaKnown RBP13.35□□□□□ -0.27
COL3A1-206ENST00000487010 PLCG2P16885 1265 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 CYP11B2P19099 503 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 CACNB1Q02641 598 aaPredicted RBP13.35□□□□□ -0.27
COL3A1-206ENST00000487010 AGBL2Q5U5Z8 902 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 ALKBH5Q6P6C2 394 aaKnown RBP13.35□□□□□ -0.27
COL3A1-206ENST00000487010 TPCN2Q8NHX9 752 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 SPAG5Q96R06 1193 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 JMJD4Q9H9V9 463 aa13.35□□□□□ -0.27
COL3A1-206ENST00000487010 NOC2LQ9Y3T9 749 aaKnown RBP13.35□□□□□ -0.27
COL3A1-206ENST00000487010 ARFGEF1Q9Y6D6 1849 aa13.34□□□□□ -0.27
COL3A1-206ENST00000487010 FRMD3A2A2Y4 597 aa13.34□□□□□ -0.27
COL3A1-206ENST00000487010 TRAPPC3O43617 180 aa13.34□□□□□ -0.27
COL3A1-206ENST00000487010 PPP1R11O60927 126 aaPredicted RBP13.34□□□□□ -0.27
COL3A1-206ENST00000487010 NR2F2P24468 414 aa13.34□□□□□ -0.27
COL3A1-206ENST00000487010 SMTNP53814 917 aa13.34□□□□□ -0.27
COL3A1-206ENST00000487010 RHBDL3P58872 404 aa13.34□□□□□ -0.27
COL3A1-206ENST00000487010 MTMR3Q13615 1198 aa13.34□□□□□ -0.27
COL3A1-206ENST00000487010 FRMD5Q7Z6J6 570 aa13.34□□□□□ -0.27
COL3A1-206ENST00000487010 SLFN11Q7Z7L1 901 aa13.34□□□□□ -0.27
COL3A1-206ENST00000487010 LRRC47Q8N1G4 583 aaKnown RBP13.34□□□□□ -0.27
COL3A1-206ENST00000487010 RASGEF1CQ8N431 466 aa13.34□□□□□ -0.27
COL3A1-206ENST00000487010 PROCA1Q8NCQ7 364 aaPredicted RBP13.34□□□□□ -0.27
COL3A1-206ENST00000487010 CUL5Q93034 780 aa13.34□□□□□ -0.27
COL3A1-206ENST00000487010 DDX47Q9H0S4 455 aaKnown RBP13.34□□□□□ -0.27
COL3A1-206ENST00000487010 A1CFQ9NQ94 594 aaKnown RBP13.34□□□□□ -0.27
COL3A1-206ENST00000487010 FBXL5Q9UKA1 691 aa13.34□□□□□ -0.27
COL3A1-206ENST00000487010 NENFQ9UMX5 172 aa13.34□□□□□ -0.27
COL3A1-206ENST00000487010 ATP8B3O60423 1300 aa13.34□□□□□ -0.27
COL3A1-206ENST00000487010 PLIN4Q96Q06 1357 aa13.34□□□□□ -0.27
COL3A1-206ENST00000487010 TNRC6CQ9HCJ0 1690 aaKnown RBP13.33□□□□□ -0.27
COL3A1-206ENST00000487010 POTEB3A0JP26 581 aa13.33□□□□□ -0.27
COL3A1-206ENST00000487010 POTECB2RU33 542 aa13.33□□□□□ -0.27
COL3A1-206ENST00000487010 KRIT1O00522 736 aa13.33□□□□□ -0.27
COL3A1-206ENST00000487010 SLC26A4O43511 780 aa13.33□□□□□ -0.27
COL3A1-206ENST00000487010 PON1P27169 355 aa13.33□□□□□ -0.27
COL3A1-206ENST00000487010 FLT3P36888 993 aa13.33□□□□□ -0.27
COL3A1-206ENST00000487010 PRKCIP41743 596 aa13.33□□□□□ -0.27
COL3A1-206ENST00000487010 POTEBQ6S5H4 581 aa13.33□□□□□ -0.27
COL3A1-206ENST00000487010 C15orf52Q6ZUT6 534 aaKnown RBP13.33□□□□□ -0.27
COL3A1-206ENST00000487010 DNAAF5Q86Y56 855 aa13.33□□□□□ -0.27
COL3A1-206ENST00000487010 CCDC13Q8IYE1 715 aa13.33□□□□□ -0.27
COL3A1-206ENST00000487010 ADGRF4Q8IZF3 695 aa13.33□□□□□ -0.27
COL3A1-206ENST00000487010 LMBR1Q8WVP7 490 aa13.33□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms