RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 GHRP10912 638 aa14.96□□□□□ -0.01
HDAC6-227ENST00000485102 ITGB5P18084 799 aa14.96□□□□□ -0.01
HDAC6-227ENST00000485102 CTNNB1P35222 781 aa14.96□□□□□ -0.01
HDAC6-227ENST00000485102 PPFIA1Q13136 1202 aa14.96□□□□□ -0.01
HDAC6-227ENST00000485102 SMAD2Q15796 467 aaKnown RBP14.96□□□□□ -0.01
HDAC6-227ENST00000485102 GRIK4Q16099 956 aa14.96□□□□□ -0.01
HDAC6-227ENST00000485102 RUFY4Q6ZNE9 571 aa14.96□□□□□ -0.01
HDAC6-227ENST00000485102 TSHZ1Q6ZSZ6 1077 aa14.96□□□□□ -0.01
HDAC6-227ENST00000485102 P2RX5Q93086 422 aa14.96□□□□□ -0.01
HDAC6-227ENST00000485102 UPF3BQ9BZI7 483 aaKnown RBP14.96□□□□□ -0.01
HDAC6-227ENST00000485102 PSTPIP2Q9H939 334 aa14.96□□□□□ -0.01
HDAC6-227ENST00000485102 SEC63Q9UGP8 760 aaKnown RBP14.96□□□□□ -0.01
HDAC6-227ENST00000485102 TUBE1Q9UJT0 475 aa14.96□□□□□ -0.01
HDAC6-227ENST00000485102 GRM6O15303 877 aa14.95□□□□□ -0.02
HDAC6-227ENST00000485102 MMP1P03956 469 aa14.95□□□□□ -0.02
HDAC6-227ENST00000485102 LIFRP42702 1097 aa14.95□□□□□ -0.02
HDAC6-227ENST00000485102 HYAL1Q12794 435 aa14.95□□□□□ -0.02
HDAC6-227ENST00000485102 SRBD1Q8N5C6 995 aaKnown RBP14.95□□□□□ -0.02
HDAC6-227ENST00000485102 TNPO1Q92973 898 aaKnown RBP14.95□□□□□ -0.02
HDAC6-227ENST00000485102 FTHL17Q9BXU8 183 aa14.95□□□□□ -0.02
HDAC6-227ENST00000485102 JADE2Q9NQC1 790 aa14.95□□□□□ -0.02
HDAC6-227ENST00000485102 CLDND1Q9NY35 253 aa14.95□□□□□ -0.02
HDAC6-227ENST00000485102 ATG2AQ2TAZ0 1938 aa14.95□□□□□ -0.02
HDAC6-227ENST00000485102 CALM1P0DP23 149 aa14.94□□□□□ -0.02
HDAC6-227ENST00000485102 CALM2P0DP24 149 aa14.94□□□□□ -0.02
HDAC6-227ENST00000485102 CALM3P0DP25 149 aa14.94□□□□□ -0.02
HDAC6-227ENST00000485102 SP4Q02446 784 aa14.94□□□□□ -0.02
HDAC6-227ENST00000485102 MTMR1Q13613 665 aa14.94□□□□□ -0.02
HDAC6-227ENST00000485102 CAMK1Q14012 370 aa14.94□□□□□ -0.02
HDAC6-227ENST00000485102 IER5Q5VY09 327 aa14.94□□□□□ -0.02
HDAC6-227ENST00000485102 DNAJB3Q8WWF6 145 aa14.94□□□□□ -0.02
HDAC6-227ENST00000485102 PIBF1Q8WXW3 757 aa14.94□□□□□ -0.02
HDAC6-227ENST00000485102 TMEM87BQ96K49 555 aa14.94□□□□□ -0.02
HDAC6-227ENST00000485102 POP1Q99575 1024 aaKnown RBP14.94□□□□□ -0.02
HDAC6-227ENST00000485102 PLAGL2Q9UPG8 496 aa14.94□□□□□ -0.02
HDAC6-227ENST00000485102 CDY2AQ9Y6F7 541 aa14.94□□□□□ -0.02
HDAC6-227ENST00000485102 C5orf42Q9H799 3197 aa14.93□□□□□ -0.02
HDAC6-227ENST00000485102 TECTAO75443 2155 aa14.93□□□□□ -0.02
HDAC6-227ENST00000485102 MBTPS2O43462 519 aa14.93□□□□□ -0.02
HDAC6-227ENST00000485102 MCM5P33992 734 aa14.93□□□□□ -0.02
HDAC6-227ENST00000485102 IRS1P35568 1242 aa14.93□□□□□ -0.02
HDAC6-227ENST00000485102 MRPS6P82932 125 aaKnown RBP14.93□□□□□ -0.02
HDAC6-227ENST00000485102 ADAM15Q13444 863 aa14.93□□□□□ -0.02
HDAC6-227ENST00000485102 BTG3Q14201 252 aaPredicted RBP14.93□□□□□ -0.02
HDAC6-227ENST00000485102 CSPP1Q1MSJ5 1256 aa14.93□□□□□ -0.02
HDAC6-227ENST00000485102 CASC1Q6TDU7 716 aa14.93□□□□□ -0.02
HDAC6-227ENST00000485102 RTN4RL1Q86UN2 441 aaPredicted RBP14.93□□□□□ -0.02
HDAC6-227ENST00000485102 CMTR2Q8IYT2 770 aaKnown RBP14.93□□□□□ -0.02
HDAC6-227ENST00000485102 GLG1Q92896 1179 aa14.93□□□□□ -0.02
HDAC6-227ENST00000485102 AGO3Q9H9G7 860 aaKnown RBP14.93□□□□□ -0.02
HDAC6-227ENST00000485102 KDM3AQ9Y4C1 1321 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 TRIOO75962 3097 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 SPDYE3A6NKU9 549 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 SH2B2O14492 632 aaPredicted RBP14.92□□□□□ -0.02
HDAC6-227ENST00000485102 PLEKHA8P1O95397 391 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 EYA4O95677 639 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 INSRRP14616 1297 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 DLX2Q07687 328 aaPredicted RBP14.92□□□□□ -0.02
HDAC6-227ENST00000485102 SMAD4Q13485 552 aaKnown RBP14.92□□□□□ -0.02
HDAC6-227ENST00000485102 HERC4Q5GLZ8 1057 aaPredicted RBP14.92□□□□□ -0.02
HDAC6-227ENST00000485102 PLPPR4Q7Z2D5 763 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 NPAS4Q8IUM7 802 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 NME8Q8N427 588 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 LINC01599Q8WXQ3 324 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 PPP2R3CQ969Q6 453 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 PCYT2Q99447 389 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 MYL10Q9BUA6 226 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 PCDHA6Q9UN73 950 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 PCDHA8Q9Y5H6 950 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 PCDHA2Q9Y5H9 948 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 RBM8AQ9Y5S9 174 aaKnown RBP14.92□□□□□ -0.02
HDAC6-227ENST00000485102 NFASCO94856 1347 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 IGSF9BQ9UPX0 1349 aa14.92□□□□□ -0.02
HDAC6-227ENST00000485102 PRC1O43663 620 aa14.91□□□□□ -0.02
HDAC6-227ENST00000485102 EP400NLQ6ZTU2 488 aa14.91□□□□□ -0.02
HDAC6-227ENST00000485102 SGMS1Q86VZ5 419 aa14.91□□□□□ -0.02
HDAC6-227ENST00000485102 SPPL3Q8TCT6 385 aa14.91□□□□□ -0.02
HDAC6-227ENST00000485102 MSLNLQ96KJ4 702 aa14.91□□□□□ -0.02
HDAC6-227ENST00000485102 JPH1Q9HDC5 661 aaPredicted RBP14.91□□□□□ -0.02
HDAC6-227ENST00000485102 KCNH7Q9NS40 1196 aa14.91□□□□□ -0.02
HDAC6-227ENST00000485102 SLC9A2Q9UBY0 812 aa14.91□□□□□ -0.02
HDAC6-227ENST00000485102 SMIM35A0A1B0GVV1 85 aa14.9□□□□□ -0.02
HDAC6-227ENST00000485102 CCDC69A6NI79 296 aa14.9□□□□□ -0.02
HDAC6-227ENST00000485102 TBX10O75333 385 aa14.9□□□□□ -0.02
HDAC6-227ENST00000485102 ATG7O95352 703 aa14.9□□□□□ -0.02
HDAC6-227ENST00000485102 STAG3L1P0CL83 205 aa14.9□□□□□ -0.02
HDAC6-227ENST00000485102 MARK3P27448 753 aa14.9□□□□□ -0.02
HDAC6-227ENST00000485102 CD52P31358 61 aa14.9□□□□□ -0.02
HDAC6-227ENST00000485102 SLC26A2P50443 739 aa14.9□□□□□ -0.02
HDAC6-227ENST00000485102 BMP8AQ7Z5Y6 402 aa14.9□□□□□ -0.02
HDAC6-227ENST00000485102 FANCBQ8NB91 859 aa14.9□□□□□ -0.02
HDAC6-227ENST00000485102 MXRA8Q9BRK3 442 aa14.9□□□□□ -0.02
HDAC6-227ENST00000485102 CELF4Q9BZC1 486 aaKnown RBP14.9□□□□□ -0.02
HDAC6-227ENST00000485102 AZI2Q9H6S1 392 aa14.9□□□□□ -0.02
HDAC6-227ENST00000485102 ALG13Q9NP73 1137 aaKnown RBP14.9□□□□□ -0.02
HDAC6-227ENST00000485102 CD207Q9UJ71 328 aa14.9□□□□□ -0.02
HDAC6-227ENST00000485102 PADI3Q9ULW8 664 aa14.9□□□□□ -0.02
HDAC6-227ENST00000485102 TRPV2Q9Y5S1 764 aa14.9□□□□□ -0.02
HDAC6-227ENST00000485102 MRPL42Q9Y6G3 142 aaKnown RBP14.9□□□□□ -0.02
HDAC6-227ENST00000485102 ZDBF2Q9HCK1 2354 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms