RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	DIS3	Q9Y2L1	958 aa	Known RBP	12.51	□□□□□ -0.41
APTX-223	ENST00000479656	ALDH1A1	P00352	501 aa		12.51	□□□□□ -0.41
APTX-223	ENST00000479656	ACTR2	P61160	394 aa		12.51	□□□□□ -0.41
APTX-223	ENST00000479656	HTRA3	P83110	453 aa		12.51	□□□□□ -0.41
APTX-223	ENST00000479656	RAD51AP2	Q09MP3	1159 aa		12.51	□□□□□ -0.41
APTX-223	ENST00000479656	NEDD9	Q14511	834 aa		12.51	□□□□□ -0.41
APTX-223	ENST00000479656	KCNB1	Q14721	858 aa		12.51	□□□□□ -0.41
APTX-223	ENST00000479656	UGCG	Q16739	394 aa		12.51	□□□□□ -0.41
APTX-223	ENST00000479656	UVSSA	Q2YD98	709 aa		12.51	□□□□□ -0.41
APTX-223	ENST00000479656	TMEM63B	Q5T3F8	832 aa		12.51	□□□□□ -0.41
APTX-223	ENST00000479656	ZNF658	Q5TYW1	1059 aa	Predicted RBP	12.51	□□□□□ -0.41
APTX-223	ENST00000479656	SWSAP1	Q6NVH7	229 aa		12.51	□□□□□ -0.41
APTX-223	ENST00000479656	KCNV1	Q6PIU1	500 aa		12.51	□□□□□ -0.41
APTX-223	ENST00000479656	ABHD15	Q6UXT9	468 aa		12.51	□□□□□ -0.41
APTX-223	ENST00000479656	TRMT1L	Q7Z2T5	733 aa	Known RBP	12.51	□□□□□ -0.41
APTX-223	ENST00000479656	DHX40	Q8IX18	779 aa	Known RBP	12.51	□□□□□ -0.41
APTX-223	ENST00000479656	SMAP1	Q8IYB5	467 aa	Predicted RBP	12.51	□□□□□ -0.41
APTX-223	ENST00000479656	RDM1	Q8NG50	284 aa		12.51	□□□□□ -0.41
APTX-223	ENST00000479656	DNAJC19	Q96DA6	116 aa		12.51	□□□□□ -0.41
APTX-223	ENST00000479656	BMP2K	Q9NSY1	1161 aa	Predicted RBP	12.51	□□□□□ -0.41
APTX-223	ENST00000479656	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	12.51	□□□□□ -0.41
APTX-223	ENST00000479656	BECN2	A8MW95	431 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	FARP2	O94887	1054 aa	Predicted RBP	12.5	□□□□□ -0.41
APTX-223	ENST00000479656	RHOBTB3	O94955	611 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	GGPS1	O95749	300 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	SNAI1	O95863	264 aa	Predicted RBP	12.5	□□□□□ -0.41
APTX-223	ENST00000479656	PSAP	P07602	524 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	IDE	P14735	1019 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	CD44	P16070	742 aa	Known RBP	12.5	□□□□□ -0.41
APTX-223	ENST00000479656	CTGF	P29279	349 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	PSMC5	P62195	406 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	CACNB1	Q02641	598 aa	Predicted RBP	12.5	□□□□□ -0.41
APTX-223	ENST00000479656	MAP2K5	Q13163	448 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	CNNM4	Q6P4Q7	775 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	CCDC62	Q6P9F0	684 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	MAMDC4	Q6UXC1	1216 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	UNC13D	Q70J99	1090 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	AOPEP	Q8N6M6	819 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	GIMAP8	Q8ND71	665 aa	Predicted RBP	12.5	□□□□□ -0.41
APTX-223	ENST00000479656	CCDC47	Q96A33	483 aa	Known RBP	12.5	□□□□□ -0.41
APTX-223	ENST00000479656	MLXIP	Q9HAP2	919 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	SLC5A4	Q9NY91	659 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	GABBR1	Q9UBS5	961 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	GDA	Q9Y2T3	454 aa		12.5	□□□□□ -0.41
APTX-223	ENST00000479656	PVALEF	A0A1B0GWK0	134 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	PPP1R3G	B7ZBB8	358 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	ATG7	O95352	703 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	TBC1D8	O95759	1140 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	KRT18	P05783	430 aa	Known RBP	12.49	□□□□□ -0.41
APTX-223	ENST00000479656	TXN	P10599	105 aa	Known RBP	12.49	□□□□□ -0.41
APTX-223	ENST00000479656	RINT1	Q6NUQ1	792 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	TAPT1	Q6NXT6	567 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	MIS18BP1	Q6P0N0	1132 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	C4orf19	Q8IY42	314 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	REM2	Q8IYK8	340 aa	Predicted RBP	12.49	□□□□□ -0.41
APTX-223	ENST00000479656	COPS5	Q92905	334 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	HPS3	Q969F9	1004 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	BPIFA3	Q9BQP9	254 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	TINF2	Q9BSI4	451 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	POLD4	Q9HCU8	107 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	EXOC1	Q9NV70	894 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	PANK4	Q9NVE7	773 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	DACH1	Q9UI36	760 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	MAPK8IP1	Q9UQF2	711 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	LRRC37A2	A6NM11	1700 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	DOCK5	Q9H7D0	1870 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	PLXNA1	Q9UIW2	1896 aa		12.49	□□□□□ -0.41
APTX-223	ENST00000479656	GSTTP1	A0A1W2PQM5	241 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	GOLGA6L19	H0YKK7	550 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	TNPO2	O14787	897 aa	Known RBP	12.48	□□□□□ -0.41
APTX-223	ENST00000479656	LYPLA2	O95372	231 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	CYP2B6	P20813	491 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	STK4	Q13043	487 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	GIT2	Q14161	759 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	TTLL4	Q14679	1199 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	CELF3	Q5SZQ8	465 aa	Known RBP	12.48	□□□□□ -0.41
APTX-223	ENST00000479656	KLHL10	Q6JEL2	608 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	SCFD2	Q8WU76	684 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	USP6NL	Q92738	828 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	SYNGAP1	Q96PV0	1343 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	SH2D3A	Q9BRG2	576 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	RUSC1	Q9BVN2	902 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	KATNBL1	Q9H079	304 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	VTA1	Q9NP79	307 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	GJD2	Q9UKL4	321 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	TMEM150B	A6NC51	233 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	BACH1	O14867	736 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	SUPT20HL2	P0C7V6	817 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	PTGS1	P23219	599 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	YWHAB	P31946	246 aa	Known RBP	12.48	□□□□□ -0.41
APTX-223	ENST00000479656	PRCP	P42785	496 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	VEGFB	P49765	207 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	PLCB2	Q00722	1185 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	UTP14C	Q5TAP6	766 aa	Known RBP	12.48	□□□□□ -0.41
APTX-223	ENST00000479656	METTL7B	Q6UX53	244 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	PPP4R3CP	Q6ZMV5	832 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	C1orf186	Q6ZWK4	172 aa		12.48	□□□□□ -0.41
APTX-223	ENST00000479656	CCDC60	Q8IWA6	550 aa	Predicted RBP	12.48	□□□□□ -0.41
APTX-223	ENST00000479656	DHX37	Q8IY37	1157 aa	Known RBP	12.48	□□□□□ -0.41
APTX-223	ENST00000479656	SLC39A2	Q9NP94	309 aa		12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms