RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 BTG3Q14201 252 aaPredicted RBP11.31□□□□□ -0.6
GPNMB-211ENST00000479625 GPATCH4Q5T3I0 446 aaKnown RBP11.31□□□□□ -0.6
GPNMB-211ENST00000479625 MCF2L2Q86YR7 1114 aa11.31□□□□□ -0.6
GPNMB-211ENST00000479625 SMRP1Q8NCR6 262 aa11.31□□□□□ -0.6
GPNMB-211ENST00000479625 APBB2Q92870 758 aa11.31□□□□□ -0.6
GPNMB-211ENST00000479625 CLP1Q92989 425 aaKnown RBP11.31□□□□□ -0.6
GPNMB-211ENST00000479625 KCTD12Q96CX2 325 aaKnown RBP11.31□□□□□ -0.6
GPNMB-211ENST00000479625 ASIC4Q96FT7 647 aa11.31□□□□□ -0.6
GPNMB-211ENST00000479625 PRRX2Q99811 253 aa11.31□□□□□ -0.6
GPNMB-211ENST00000479625 PDCD2LQ9BRP1 358 aa11.31□□□□□ -0.6
GPNMB-211ENST00000479625 TUT1Q9H6E5 874 aaKnown RBP11.31□□□□□ -0.6
GPNMB-211ENST00000479625 DCTPP1Q9H773 170 aa11.31□□□□□ -0.6
GPNMB-211ENST00000479625 TLR9Q9NR96 1032 aa11.31□□□□□ -0.6
GPNMB-211ENST00000479625 SETD4Q9NVD3 440 aa11.31□□□□□ -0.6
GPNMB-211ENST00000479625 USP15Q9Y4E8 981 aaPredicted RBP11.31□□□□□ -0.6
GPNMB-211ENST00000479625 TELO2Q9Y4R8 837 aa11.31□□□□□ -0.6
GPNMB-211ENST00000479625 FRYLO94915 3013 aa11.3□□□□□ -0.6
GPNMB-211ENST00000479625 A0A0D9SFI3 127 aa11.3□□□□□ -0.6
GPNMB-211ENST00000479625 DHX16O60231 1041 aaKnown RBP11.3□□□□□ -0.6
GPNMB-211ENST00000479625 CAND2O75155 1236 aa11.3□□□□□ -0.6
GPNMB-211ENST00000479625 HSPD1P10809 573 aaKnown RBP11.3□□□□□ -0.6
GPNMB-211ENST00000479625 HSD17B4P51659 736 aa11.3□□□□□ -0.6
GPNMB-211ENST00000479625 ALX1Q15699 326 aa11.3□□□□□ -0.6
GPNMB-211ENST00000479625 ASCL5Q7RTU5 278 aa11.3□□□□□ -0.6
GPNMB-211ENST00000479625 ZNF589Q86UQ0 364 aaPredicted RBP11.3□□□□□ -0.6
GPNMB-211ENST00000479625 PNMA1Q8ND90 353 aa11.3□□□□□ -0.6
GPNMB-211ENST00000479625 RPGRIP1Q96KN7 1286 aa11.3□□□□□ -0.6
GPNMB-211ENST00000479625 FAM227BQ96M60 508 aa11.3□□□□□ -0.6
GPNMB-211ENST00000479625 VAT1LQ9HCJ6 419 aa11.3□□□□□ -0.6
GPNMB-211ENST00000479625 RWDD3Q9Y3V2 267 aa11.3□□□□□ -0.6
GPNMB-211ENST00000479625 MRPL42Q9Y6G3 142 aaKnown RBP11.3□□□□□ -0.6
GPNMB-211ENST00000479625 PPP1R11O60927 126 aaPredicted RBP11.29□□□□□ -0.6
GPNMB-211ENST00000479625 CHRNA1P02708 482 aa11.29□□□□□ -0.6
GPNMB-211ENST00000479625 ITGB1P05556 798 aa11.29□□□□□ -0.6
GPNMB-211ENST00000479625 MX1P20591 662 aa11.29□□□□□ -0.6
GPNMB-211ENST00000479625 AVPR2P30518 371 aa11.29□□□□□ -0.6
GPNMB-211ENST00000479625 HOXA13P31271 388 aaPredicted RBP11.29□□□□□ -0.6
GPNMB-211ENST00000479625 NRIP1P48552 1158 aa11.29□□□□□ -0.6
GPNMB-211ENST00000479625 SIGLEC14Q08ET2 396 aa11.29□□□□□ -0.6
GPNMB-211ENST00000479625 CBX2Q14781 532 aaPredicted RBP11.29□□□□□ -0.6
GPNMB-211ENST00000479625 PGM5Q15124 567 aa11.29□□□□□ -0.6
GPNMB-211ENST00000479625 PKN1Q16512 942 aa11.29□□□□□ -0.6
GPNMB-211ENST00000479625 PAN2Q504Q3 1202 aaKnown RBP11.29□□□□□ -0.6
GPNMB-211ENST00000479625 RUFY4Q6ZNE9 571 aa11.29□□□□□ -0.6
GPNMB-211ENST00000479625 RBM23Q86U06 439 aaKnown RBP11.29□□□□□ -0.6
GPNMB-211ENST00000479625 LMBR1Q8WVP7 490 aa11.29□□□□□ -0.6
GPNMB-211ENST00000479625 LINC01599Q8WXQ3 324 aa11.29□□□□□ -0.6
GPNMB-211ENST00000479625 ZNF689Q96CS4 500 aaPredicted RBP11.29□□□□□ -0.6
GPNMB-211ENST00000479625 TTC14Q96N46 770 aa11.29□□□□□ -0.6
GPNMB-211ENST00000479625 CHMP4BQ9H444 224 aaKnown RBP11.29□□□□□ -0.6
GPNMB-211ENST00000479625 JMJD4Q9H9V9 463 aa11.29□□□□□ -0.6
GPNMB-211ENST00000479625 MLXIPQ9HAP2 919 aa11.29□□□□□ -0.6
GPNMB-211ENST00000479625 PLAGL2Q9UPG8 496 aa11.29□□□□□ -0.6
GPNMB-211ENST00000479625 MRPL11Q9Y3B7 192 aaKnown RBP11.29□□□□□ -0.6
GPNMB-211ENST00000479625 SALL3Q9BXA9 1300 aa11.29□□□□□ -0.6
GPNMB-211ENST00000479625 ZNF292O60281 2723 aa11.28□□□□□ -0.6
GPNMB-211ENST00000479625 KDM4AO75164 1064 aa11.28□□□□□ -0.6
GPNMB-211ENST00000479625 ARHGAP4P98171 946 aa11.28□□□□□ -0.6
GPNMB-211ENST00000479625 COASYQ13057 564 aa11.28□□□□□ -0.6
GPNMB-211ENST00000479625 LPIN1Q14693 890 aa11.28□□□□□ -0.6
GPNMB-211ENST00000479625 FAM26DQ5JW98 314 aa11.28□□□□□ -0.6
GPNMB-211ENST00000479625 TYW1BQ6NUM6 668 aa11.28□□□□□ -0.6
GPNMB-211ENST00000479625 MFSD6Q6ZSS7 791 aa11.28□□□□□ -0.6
GPNMB-211ENST00000479625 EFHBQ8N7U6 833 aa11.28□□□□□ -0.6
GPNMB-211ENST00000479625 MAF1Q9H063 256 aa11.28□□□□□ -0.6
GPNMB-211ENST00000479625 ZMYM6O95789 1325 aa11.28□□□□□ -0.6
GPNMB-211ENST00000479625 BAZ2BQ9UIF8 2168 aaKnown RBP11.27□□□□□ -0.6
GPNMB-211ENST00000479625 PRR23AA6NEV1 266 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 NOP56O00567 594 aaKnown RBP11.27□□□□□ -0.61
GPNMB-211ENST00000479625 DGKIO75912 1065 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 SP100P23497 879 aaPredicted RBP11.27□□□□□ -0.61
GPNMB-211ENST00000479625 GATMP50440 423 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 ADAM17P78536 824 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 FOXK2Q01167 660 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 SP4Q02446 784 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 GHRHRQ02643 423 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 MGAT3Q09327 533 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 PTPN21Q16825 1174 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 ASPRV1Q53RT3 343 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 UTP14CQ5TAP6 766 aaKnown RBP11.27□□□□□ -0.61
GPNMB-211ENST00000479625 KCNV1Q6PIU1 500 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 STOX1Q6ZVD7 989 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 VSIG10LQ86VR7 867 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 KLHL23Q8NBE8 558 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 VN1R2Q8NFZ6 395 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 SPPL3Q8TCT6 385 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 POF1BQ8WVV4 589 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 DDX12PQ92771 950 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 P2RX5Q93086 422 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 PHF7Q9BWX1 381 aaPredicted RBP11.27□□□□□ -0.61
GPNMB-211ENST00000479625 PLVAPQ9BX97 442 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 EHMT1Q9H9B1 1298 aa11.27□□□□□ -0.61
GPNMB-211ENST00000479625 DENND4AQ7Z401 1863 aa11.26□□□□□ -0.61
GPNMB-211ENST00000479625 ENPP3O14638 875 aa11.26□□□□□ -0.61
GPNMB-211ENST00000479625 PER2O15055 1255 aa11.26□□□□□ -0.61
GPNMB-211ENST00000479625 CCND2P30279 289 aa11.26□□□□□ -0.61
GPNMB-211ENST00000479625 ICAM3P32942 547 aa11.26□□□□□ -0.61
GPNMB-211ENST00000479625 SEMA3FQ13275 785 aa11.26□□□□□ -0.61
GPNMB-211ENST00000479625 NMIQ13287 307 aaPredicted RBP11.26□□□□□ -0.61
GPNMB-211ENST00000479625 CYFIP1Q7L576 1253 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms