RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 PPLO60437 1756 aa14.68□□□□□ -0.06
USP42-206ENST00000479544 CYB5D1Q6P9G0 228 aa14.68□□□□□ -0.06
USP42-206ENST00000479544 RFX8Q6ZV50 586 aa14.68□□□□□ -0.06
USP42-206ENST00000479544 TCHPQ9BT92 498 aa14.68□□□□□ -0.06
USP42-206ENST00000479544 TMOD4Q9NZQ9 345 aa14.68□□□□□ -0.06
USP42-206ENST00000479544 CHORDC1Q9UHD1 332 aaPredicted RBP14.68□□□□□ -0.06
USP42-206ENST00000479544 CFBP00751 764 aa14.67□□□□□ -0.06
USP42-206ENST00000479544 RPS8P62241 208 aaKnown RBP14.67□□□□□ -0.06
USP42-206ENST00000479544 TMED2Q15363 201 aa14.67□□□□□ -0.06
USP42-206ENST00000479544 GLE1Q53GS7 698 aaKnown RBP14.67□□□□□ -0.06
USP42-206ENST00000479544 CAPRIN2Q6IMN6 1127 aaKnown RBP14.67□□□□□ -0.06
USP42-206ENST00000479544 TMEM139Q8IV31 216 aa14.67□□□□□ -0.06
USP42-206ENST00000479544 SRRM1Q8IYB3 904 aaKnown RBP14.67□□□□□ -0.06
USP42-206ENST00000479544 AGXT2Q9BYV1 514 aa14.67□□□□□ -0.06
USP42-206ENST00000479544 ETNK1Q9HBU6 452 aa14.67□□□□□ -0.06
USP42-206ENST00000479544 NOC2LQ9Y3T9 749 aaKnown RBP14.67□□□□□ -0.06
USP42-206ENST00000479544 E9PMD0 336 aa14.67□□□□□ -0.06
USP42-206ENST00000479544 FGFR4P22455 802 aa14.67□□□□□ -0.06
USP42-206ENST00000479544 NTRK3Q16288 839 aa14.67□□□□□ -0.06
USP42-206ENST00000479544 ZNF746Q6NUN9 644 aaPredicted RBP14.67□□□□□ -0.06
USP42-206ENST00000479544 CFAP61Q8NHU2 1237 aa14.67□□□□□ -0.06
USP42-206ENST00000479544 SPON1Q9HCB6 807 aa14.67□□□□□ -0.06
USP42-206ENST00000479544 DBR1Q9UK59 544 aaKnown RBP14.67□□□□□ -0.06
USP42-206ENST00000479544 UBXN2AP68543 259 aa14.67□□□□□ -0.06
USP42-206ENST00000479544 CUL1Q13616 776 aa14.67□□□□□ -0.06
USP42-206ENST00000479544 ITIH6Q6UXX5 1313 aa14.67□□□□□ -0.06
USP42-206ENST00000479544 SMIM22K7EJ46 135 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 GNA14O95837 355 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 FAM107AO95990 144 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 ATF7P17544 494 aaPredicted RBP14.66□□□□□ -0.06
USP42-206ENST00000479544 KCNH2Q12809 1159 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 NAIF1Q69YI7 327 aaPredicted RBP14.66□□□□□ -0.06
USP42-206ENST00000479544 PCIF1Q9H4Z3 704 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 MSH2P43246 934 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 PFKFB3Q16875 520 aaPredicted RBP14.66□□□□□ -0.06
USP42-206ENST00000479544 CCDC62Q6P9F0 684 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 NSMCE1Q8WV22 266 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 PBKQ96KB5 322 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 PRMT1Q99873 361 aaKnown RBP14.66□□□□□ -0.06
USP42-206ENST00000479544 ARHGEF28Q8N1W1 1705 aaKnown RBP14.66□□□□□ -0.06
USP42-206ENST00000479544 OPHN1O60890 802 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 CDKAL1Q5VV42 579 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 CTAGE3PQ8IX95 158 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 TTC16Q8NEE8 873 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.66□□□□□ -0.06
USP42-206ENST00000479544 RILPQ96NA2 401 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 TRIM4Q9C037 500 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 WDR17Q8IZU2 1322 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 SALL1Q9NSC2 1324 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 AFPP02771 609 aaKnown RBP14.66□□□□□ -0.06
USP42-206ENST00000479544 PAX7P23759 505 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 RCN2Q14257 317 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 GLYCTKQ8IVS8 523 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 CASKIN2Q8WXE0 1202 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 NT5C3AQ9H0P0 336 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 L3MBTL1Q9Y468 752 aa14.66□□□□□ -0.06
USP42-206ENST00000479544 RCCD1A6NED2 376 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 GNPATO15228 680 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 CHN1P15882 459 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 KCTD1Q719H9 257 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 SGSM3Q96HU1 749 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 GPR101Q96P66 508 aaPredicted RBP14.65□□□□□ -0.06
USP42-206ENST00000479544 PHF20Q9BVI0 1012 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 CNOT10Q9H9A5 744 aaKnown RBP14.65□□□□□ -0.06
USP42-206ENST00000479544 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.65□□□□□ -0.06
USP42-206ENST00000479544 NCAPD2Q15021 1401 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 VIRMAQ69YN4 1812 aaKnown RBP14.65□□□□□ -0.06
USP42-206ENST00000479544 ARHGAP42A6NI28 874 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 LRRC8CQ8TDW0 803 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 ARHGEF35A5YM69 484 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 TDP2O95551 362 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 BCRP11274 1271 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 RASSF2P50749 326 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 PSMD6Q15008 389 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 PPP1R21Q6ZMI0 780 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 SUPT20HQ8NEM7 779 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 AK8Q96MA6 479 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 CYTH2Q99418 400 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 ANKRD2Q9GZV1 360 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 CUEDC2Q9H467 287 aa14.65□□□□□ -0.06
USP42-206ENST00000479544 TECPR2O15040 1411 aa14.64□□□□□ -0.07
USP42-206ENST00000479544 UFL1O94874 794 aa14.64□□□□□ -0.07
USP42-206ENST00000479544 MECOMQ03112 1051 aa14.64□□□□□ -0.07
USP42-206ENST00000479544 NBPF9Q3BBW0 867 aa14.64□□□□□ -0.07
USP42-206ENST00000479544 DPP8Q6V1X1 898 aaPredicted RBP14.64□□□□□ -0.07
USP42-206ENST00000479544 ZNF804AQ7Z570 1209 aa14.64□□□□□ -0.07
USP42-206ENST00000479544 LONP2Q86WA8 852 aa14.64□□□□□ -0.07
USP42-206ENST00000479544 ARMC2Q8NEN0 867 aa14.64□□□□□ -0.07
USP42-206ENST00000479544 RAB3IPQ96QF0 476 aaPredicted RBP14.64□□□□□ -0.07
USP42-206ENST00000479544 TSC22D3Q99576 134 aa14.64□□□□□ -0.07
USP42-206ENST00000479544 CARD10Q9BWT7 1032 aa14.64□□□□□ -0.07
USP42-206ENST00000479544 PACSIN1Q9BY11 444 aa14.64□□□□□ -0.07
USP42-206ENST00000479544 ECT2Q9H8V3 914 aa14.64□□□□□ -0.07
USP42-206ENST00000479544 RIC8AQ9NPQ8 531 aa14.64□□□□□ -0.07
USP42-206ENST00000479544 PLCG2P16885 1265 aa14.64□□□□□ -0.07
USP42-206ENST00000479544 HSD17B3P37058 310 aa14.64□□□□□ -0.07
USP42-206ENST00000479544 SUSD4Q5VX71 490 aa14.64□□□□□ -0.07
USP42-206ENST00000479544 PAPD7Q5XG87 772 aaKnown RBP14.64□□□□□ -0.07
USP42-206ENST00000479544 SEPT14Q6ZU15 432 aa14.64□□□□□ -0.07
USP42-206ENST00000479544 ARMC9Q7Z3E5 817 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms