RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 ZNF263O14978 683 aa13.48□□□□□ -0.25
PTPRF-212ENST00000477970 EPHB6O15197 1021 aa13.48□□□□□ -0.25
PTPRF-212ENST00000477970 ECE1P42892 770 aa13.48□□□□□ -0.25
PTPRF-212ENST00000477970 CKAP4Q07065 602 aaKnown RBP13.48□□□□□ -0.25
PTPRF-212ENST00000477970 KIF5AQ12840 1032 aa13.48□□□□□ -0.25
PTPRF-212ENST00000477970 CCDC40Q4G0X9 1142 aa13.48□□□□□ -0.25
PTPRF-212ENST00000477970 B3GNT9Q6UX72 402 aa13.48□□□□□ -0.25
PTPRF-212ENST00000477970 OTOP1Q7RTM1 612 aa13.48□□□□□ -0.25
PTPRF-212ENST00000477970 EIF2AK1Q9BQI3 630 aaKnown RBP13.48□□□□□ -0.25
PTPRF-212ENST00000477970 TCP10L2B9ZVM9 353 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 CETN3O15182 167 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 CALUO43852 315 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-212ENST00000477970 CAP2P40123 477 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 KIF11P52732 1056 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 ITIH3Q06033 890 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 DMTNQ08495 405 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 KNOP1Q1ED39 458 aaKnown RBP13.47□□□□□ -0.25
PTPRF-212ENST00000477970 LARGE2Q8N3Y3 721 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 TRIM58Q8NG06 486 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 REEP2Q9BRK0 252 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 ARFGAP3Q9NP61 516 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 PLCB1Q9NQ66 1216 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 SAR1BQ9Y6B6 198 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 LRRC53A6NM62 1247 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 NOL4O94818 638 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 SSBP05455 408 aaKnown RBP eCLIP13.47□□□□□ -0.25
PTPRF-212ENST00000477970 FAM83BQ5T0W9 1011 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 WDR93Q6P2C0 686 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 RBM46Q8TBY0 533 aaKnown RBP13.47□□□□□ -0.25
PTPRF-212ENST00000477970 EEF2KMTQ96G04 330 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 ARID3AQ99856 593 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 LACRTQ9GZZ8 138 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 MMRN2Q9H8L6 949 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 TRIM10Q9UDY6 481 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 FBXL5Q9UKA1 691 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 PCDHA13Q9Y5I0 950 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 RCCD1A6NED2 376 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 TBC1D8O95759 1140 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 KRT18P05783 430 aaKnown RBP13.47□□□□□ -0.25
PTPRF-212ENST00000477970 SNAP25P60880 206 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 HGSNATQ68CP4 663 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 NIPA1Q7RTP0 329 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 NEK9Q8TD19 979 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 ACER1Q8TDN7 264 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 SECISBP2LQ93073 1101 aaKnown RBP13.47□□□□□ -0.25
PTPRF-212ENST00000477970 FAM207AQ9NSI2 230 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-212ENST00000477970 TYW1Q9NV66 732 aaKnown RBP13.47□□□□□ -0.25
PTPRF-212ENST00000477970 SEL1LQ9UBV2 794 aa13.47□□□□□ -0.25
PTPRF-212ENST00000477970 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.47□□□□□ -0.25
PTPRF-212ENST00000477970 RPTORQ8N122 1335 aa13.46□□□□□ -0.25
PTPRF-212ENST00000477970 NPHP3-ACAD11A0A0J9YXS1 232 aa13.46□□□□□ -0.25
PTPRF-212ENST00000477970 SERPING1P05155 500 aa13.46□□□□□ -0.25
PTPRF-212ENST00000477970 BCRP11274 1271 aa13.46□□□□□ -0.25
PTPRF-212ENST00000477970 HSD17B4P51659 736 aa13.46□□□□□ -0.25
PTPRF-212ENST00000477970 RNF10Q8N5U6 811 aaKnown RBP13.46□□□□□ -0.25
PTPRF-212ENST00000477970 RUBCNQ92622 972 aa13.46□□□□□ -0.25
PTPRF-212ENST00000477970 WDR18Q9BV38 432 aa13.46□□□□□ -0.25
PTPRF-212ENST00000477970 WDR11Q9BZH6 1224 aa13.46□□□□□ -0.25
PTPRF-212ENST00000477970 GBP3Q9H0R5 595 aa13.46□□□□□ -0.25
PTPRF-212ENST00000477970 METTL14Q9HCE5 456 aaKnown RBP13.46□□□□□ -0.25
PTPRF-212ENST00000477970 MAP3K20Q9NYL2 800 aaKnown RBP13.46□□□□□ -0.25
PTPRF-212ENST00000477970 AIPL1Q9NZN9 384 aa13.46□□□□□ -0.25
PTPRF-212ENST00000477970 ANXA13P27216 316 aa13.46□□□□□ -0.25
PTPRF-212ENST00000477970 ZNF76P36508 570 aa13.46□□□□□ -0.25
PTPRF-212ENST00000477970 PSMC6P62333 389 aa13.46□□□□□ -0.25
PTPRF-212ENST00000477970 ADAM9Q13443 819 aa13.46□□□□□ -0.25
PTPRF-212ENST00000477970 IFIH1Q9BYX4 1025 aaKnown RBP13.46□□□□□ -0.25
PTPRF-212ENST00000477970 JRKLQ9Y4A0 524 aa13.46□□□□□ -0.25
PTPRF-212ENST00000477970 TARSL2A2RTX5 802 aaKnown RBP13.46□□□□□ -0.26
PTPRF-212ENST00000477970 MCM3P25205 808 aa13.46□□□□□ -0.26
PTPRF-212ENST00000477970 HOXA13P31271 388 aaPredicted RBP13.46□□□□□ -0.26
PTPRF-212ENST00000477970 HOXD13P35453 343 aa13.46□□□□□ -0.26
PTPRF-212ENST00000477970 PLA2G4AP47712 749 aa13.46□□□□□ -0.26
PTPRF-212ENST00000477970 RRAGAQ7L523 313 aa13.46□□□□□ -0.26
PTPRF-212ENST00000477970 CCDC155Q8N6L0 562 aa13.46□□□□□ -0.26
PTPRF-212ENST00000477970 TMEM174Q8WUU8 243 aa13.46□□□□□ -0.26
PTPRF-212ENST00000477970 GANQ9H2C0 597 aa13.46□□□□□ -0.26
PTPRF-212ENST00000477970 DAAM1Q9Y4D1 1078 aa13.46□□□□□ -0.26
PTPRF-212ENST00000477970 FRMPD4Q14CM0 1322 aa13.45□□□□□ -0.26
PTPRF-212ENST00000477970 IQCA1LA6NCM1 817 aa13.45□□□□□ -0.26
PTPRF-212ENST00000477970 MAP2K7O14733 419 aa13.45□□□□□ -0.26
PTPRF-212ENST00000477970 ERLIN1O75477 346 aa13.45□□□□□ -0.26
PTPRF-212ENST00000477970 ATP1A1P05023 1023 aaKnown RBP13.45□□□□□ -0.26
PTPRF-212ENST00000477970 ASNSP08243 561 aa13.45□□□□□ -0.26
PTPRF-212ENST00000477970 EIF4A3P38919 411 aaKnown RBP13.45□□□□□ -0.26
PTPRF-212ENST00000477970 ZNF131P52739 623 aa13.45□□□□□ -0.26
PTPRF-212ENST00000477970 DPY19L2P1Q6NXN4 242 aa13.45□□□□□ -0.26
PTPRF-212ENST00000477970 KRT26Q7Z3Y9 468 aa13.45□□□□□ -0.26
PTPRF-212ENST00000477970 SFR1Q86XK3 245 aa13.45□□□□□ -0.26
PTPRF-212ENST00000477970 PUF60Q9UHX1 559 aaKnown RBP13.45□□□□□ -0.26
PTPRF-212ENST00000477970 PNMA2Q9UL42 364 aa13.45□□□□□ -0.26
PTPRF-212ENST00000477970 PARP14Q460N5 1801 aa13.45□□□□□ -0.26
PTPRF-212ENST00000477970 GTPBP10A4D1E9 387 aaKnown RBP13.45□□□□□ -0.26
PTPRF-212ENST00000477970 EML1O00423 815 aa13.45□□□□□ -0.26
PTPRF-212ENST00000477970 MEIS1O00470 390 aa13.45□□□□□ -0.26
PTPRF-212ENST00000477970 TACC1O75410 805 aa13.45□□□□□ -0.26
PTPRF-212ENST00000477970 RPL13P26373 211 aaKnown RBP13.45□□□□□ -0.26
PTPRF-212ENST00000477970 FSTL1Q12841 308 aa13.45□□□□□ -0.26
PTPRF-212ENST00000477970 PABPC4Q13310 644 aaKnown RBP eCLIP13.45□□□□□ -0.26
PTPRF-212ENST00000477970 SLC9C1Q4G0N8 1177 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 534.1 ms