RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 NOC4LQ9BVI4 516 aaKnown RBP9.19□□□□□ -0.94
VAPB-205ENST00000476395 CUEDC2Q9H467 287 aa9.19□□□□□ -0.94
VAPB-205ENST00000476395 NOD2Q9HC29 1040 aa9.19□□□□□ -0.94
VAPB-205ENST00000476395 EPB41L5Q9HCM4 733 aa9.19□□□□□ -0.94
VAPB-205ENST00000476395 IRAK4Q9NWZ3 460 aa9.19□□□□□ -0.94
VAPB-205ENST00000476395 PNMA2Q9UL42 364 aa9.19□□□□□ -0.94
VAPB-205ENST00000476395 CNTNAP4Q9C0A0 1308 aa9.19□□□□□ -0.94
VAPB-205ENST00000476395 CCDC194A0A1B0GVG4 234 aa9.19□□□□□ -0.94
VAPB-205ENST00000476395 KLRF2D3W0D1 207 aa9.19□□□□□ -0.94
VAPB-205ENST00000476395 IPO7O95373 1038 aaKnown RBP9.19□□□□□ -0.94
VAPB-205ENST00000476395 TDP2O95551 362 aa9.19□□□□□ -0.94
VAPB-205ENST00000476395 EPB41P11171 864 aaKnown RBP9.19□□□□□ -0.94
VAPB-205ENST00000476395 IRX1P78414 480 aaPredicted RBP9.19□□□□□ -0.94
VAPB-205ENST00000476395 GFPT1Q06210 699 aaPredicted RBP9.19□□□□□ -0.94
VAPB-205ENST00000476395 CKAP4Q07065 602 aaKnown RBP9.19□□□□□ -0.94
VAPB-205ENST00000476395 CFAP58Q5T655 872 aa9.19□□□□□ -0.94
VAPB-205ENST00000476395 C16orf86Q6ZW13 317 aa9.19□□□□□ -0.94
VAPB-205ENST00000476395 BZW1Q7L1Q6 419 aaKnown RBP9.19□□□□□ -0.94
VAPB-205ENST00000476395 NOC3LQ8WTT2 800 aaKnown RBP9.19□□□□□ -0.94
VAPB-205ENST00000476395 PRCCQ92733 491 aaPredicted RBP9.19□□□□□ -0.94
VAPB-205ENST00000476395 NUCKS1Q9H1E3 243 aaKnown RBP9.19□□□□□ -0.94
VAPB-205ENST00000476395 NDST4Q9H3R1 872 aa9.19□□□□□ -0.94
VAPB-205ENST00000476395 RIOX1Q9H6W3 641 aa9.19□□□□□ -0.94
VAPB-205ENST00000476395 ATP6V0A4Q9HBG4 840 aa9.19□□□□□ -0.94
VAPB-205ENST00000476395 GPBP1L1Q9HC44 474 aaPredicted RBP9.19□□□□□ -0.94
VAPB-205ENST00000476395 PACSIN2Q9UNF0 486 aaPredicted RBP9.19□□□□□ -0.94
VAPB-205ENST00000476395 ATXN2Q99700 1313 aaKnown RBP9.18□□□□□ -0.94
VAPB-205ENST00000476395 POTEMA6NI47 508 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 A8MUI8 341 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 BUB1BO60566 1050 aaPredicted RBP9.18□□□□□ -0.94
VAPB-205ENST00000476395 ATP6V1G2O95670 118 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 CLTAP09496 248 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 TRIM21P19474 475 aaKnown RBP9.18□□□□□ -0.94
VAPB-205ENST00000476395 TNFRSF8P28908 595 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 UBA7P41226 1012 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 SLC1A4P43007 532 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 EPHB4P54760 987 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 KRT83P78385 493 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 LETM2Q2VYF4 491 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 CCDC178Q5BJE1 867 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 CDCA2Q69YH5 1023 aaPredicted RBP9.18□□□□□ -0.94
VAPB-205ENST00000476395 GALNT17Q6IS24 598 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 YTHDF3Q7Z739 585 aaKnown RBP9.18□□□□□ -0.94
VAPB-205ENST00000476395 PNMA8AQ86V59 439 aaPredicted RBP9.18□□□□□ -0.94
VAPB-205ENST00000476395 MDM1Q8TC05 714 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 TGFBRAP1Q8WUH2 860 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 FAM210AQ96ND0 272 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 PIGSQ96S52 555 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 MAGEF1Q9HAY2 307 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 NUB1Q9Y5A7 615 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 USP17L5A8MUK1 530 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 BUB1O43683 1085 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 KRT86O43790 486 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 MYBP10242 640 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 FXR2P51116 673 aaKnown RBP eCLIP9.18□□□□□ -0.94
VAPB-205ENST00000476395 ELF3P78545 371 aaPredicted RBP9.18□□□□□ -0.94
VAPB-205ENST00000476395 PPP1R7Q15435 360 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 ZC3H3Q8IXZ2 948 aaKnown RBP9.18□□□□□ -0.94
VAPB-205ENST00000476395 ARMC2Q8NEN0 867 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 CEP95Q96GE4 821 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 P2RX7Q99572 595 aaKnown RBP9.18□□□□□ -0.94
VAPB-205ENST00000476395 FAM207AQ9NSI2 230 aaPredicted RBP9.18□□□□□ -0.94
VAPB-205ENST00000476395 SAP30BPQ9UHR5 308 aaKnown RBP9.18□□□□□ -0.94
VAPB-205ENST00000476395 NENFQ9UMX5 172 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 UBR3Q6ZT12 1888 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 PLIN4Q96Q06 1357 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 IGKV6D-41A0A0C4DH26 115 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 SMCO2A6NFE2 343 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 CDK8P49336 464 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 PDXDC1Q6P996 788 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 MICALCLQ6ZW33 695 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 DDX42Q86XP3 938 aaKnown RBP eCLIP9.18□□□□□ -0.94
VAPB-205ENST00000476395 C2CD5Q86YS7 1000 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 SPICE1Q8N0Z3 855 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 SEC16BQ96JE7 1060 aa9.18□□□□□ -0.94
VAPB-205ENST00000476395 BIN2Q9UBW5 565 aaPredicted RBP9.18□□□□□ -0.94
VAPB-205ENST00000476395 THSD7AQ9UPZ6 1657 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 TESPA1A2RU30 521 aaPredicted RBP9.17□□□□□ -0.94
VAPB-205ENST00000476395 SNHG28P0DPA3 235 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 HOXD13P35453 343 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 LRRC41Q15345 812 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 C8orf74Q6P047 294 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 CLEC10AQ8IUN9 316 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 MAPKAPK5Q8IW41 473 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 RPGRIP1Q96KN7 1286 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 MTFR1LQ9H019 292 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 ARHGEF10LQ9HCE6 1279 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 GDF3Q9NR23 364 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 PANK4Q9NVE7 773 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 PLAAQ9Y263 795 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 ABCB11O95342 1321 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 FAM170AA1A519 330 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 DCAF8L1A6NGE4 600 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 RGL2O15211 777 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 HEXIM1O94992 359 aaKnown RBP9.17□□□□□ -0.94
VAPB-205ENST00000476395 ANP32DO95626 131 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 SLURP2P0DP57 97 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 ASIC1P78348 528 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 AP1ARQ63HQ0 302 aa9.17□□□□□ -0.94
VAPB-205ENST00000476395 UNC13DQ70J99 1090 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms