RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 MXRA8Q9BRK3 442 aa17.22■□□□□ 0.35
VARS-223ENST00000474643 C22orf23Q9BZE7 217 aa17.22■□□□□ 0.35
VARS-223ENST00000474643 SLKQ9H2G2 1235 aaPredicted RBP17.22■□□□□ 0.35
VARS-223ENST00000474643 NCOA5Q9HCD5 579 aaKnown RBP17.22■□□□□ 0.35
VARS-223ENST00000474643 KCNH7Q9NS40 1196 aa17.22■□□□□ 0.35
VARS-223ENST00000474643 FAM217BQ9NTX9 383 aaPredicted RBP17.22■□□□□ 0.35
VARS-223ENST00000474643 MTCH2Q9Y6C9 303 aa17.22■□□□□ 0.35
VARS-223ENST00000474643 STXBP3O00186 592 aa17.21■□□□□ 0.35
VARS-223ENST00000474643 BACH1O14867 736 aa17.21■□□□□ 0.35
VARS-223ENST00000474643 RPLP2P05387 115 aaKnown RBP17.21■□□□□ 0.35
VARS-223ENST00000474643 HOXC8P31273 242 aa17.21■□□□□ 0.35
VARS-223ENST00000474643 EVCP57679 992 aa17.21■□□□□ 0.35
VARS-223ENST00000474643 GRB10Q13322 594 aa17.21■□□□□ 0.35
VARS-223ENST00000474643 CEP55Q53EZ4 464 aa17.21■□□□□ 0.35
VARS-223ENST00000474643 TRAF7Q6Q0C0 670 aa17.21■□□□□ 0.35
VARS-223ENST00000474643 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.21■□□□□ 0.357e-7■■□□□ 11.5
VARS-223ENST00000474643 TRIM22Q8IYM9 498 aa17.21■□□□□ 0.35
VARS-223ENST00000474643 PHKBQ93100 1093 aa17.21■□□□□ 0.35
VARS-223ENST00000474643 SLC26A6Q9BXS9 759 aa17.21■□□□□ 0.35
VARS-223ENST00000474643 BACH2Q9BYV9 841 aa17.21■□□□□ 0.35
VARS-223ENST00000474643 FAM49AQ9H0Q0 323 aaPredicted RBP17.21■□□□□ 0.35
VARS-223ENST00000474643 C6orf50Q9HD87 102 aa17.21■□□□□ 0.35
VARS-223ENST00000474643 TELO2Q9Y4R8 837 aa17.21■□□□□ 0.35
VARS-223ENST00000474643 NID2Q14112 1375 aa17.2■□□□□ 0.34
VARS-223ENST00000474643 GSTTP1A0A1W2PQM5 241 aa17.2■□□□□ 0.34
VARS-223ENST00000474643 EPOPA6NHQ4 379 aa17.2■□□□□ 0.34
VARS-223ENST00000474643 RRN3P2A6NIE6 340 aa17.2■□□□□ 0.34
VARS-223ENST00000474643 DDX39AO00148 427 aaKnown RBP17.2■□□□□ 0.34
VARS-223ENST00000474643 PPFIA3O75145 1194 aa17.2■□□□□ 0.34
VARS-223ENST00000474643 ARHGEF15O94989 841 aa17.2■□□□□ 0.34
VARS-223ENST00000474643 SCG2P13521 617 aa17.2■□□□□ 0.34
VARS-223ENST00000474643 AK2P54819 239 aa17.2■□□□□ 0.34
VARS-223ENST00000474643 TCTN1Q2MV58 587 aa17.2■□□□□ 0.34
VARS-223ENST00000474643 JAKMIP3Q5VZ66 844 aa17.2■□□□□ 0.34
VARS-223ENST00000474643 MCTP2Q6DN12 878 aa17.2■□□□□ 0.34
VARS-223ENST00000474643 FBXO22Q8NEZ5 403 aa17.2■□□□□ 0.34
VARS-223ENST00000474643 ADAMTS19Q8TE59 1207 aa17.2■□□□□ 0.34
VARS-223ENST00000474643 UHRF1Q96T88 793 aaPredicted RBP17.2■□□□□ 0.34
VARS-223ENST00000474643 SPTBN5Q9NRC6 3674 aaKnown RBP17.19■□□□□ 0.34
VARS-223ENST00000474643 LINC01553A4QN01 128 aa17.19■□□□□ 0.34
VARS-223ENST00000474643 TNFRSF10AO00220 468 aa17.19■□□□□ 0.34
VARS-223ENST00000474643 GHRP10912 638 aa17.19■□□□□ 0.34
VARS-223ENST00000474643 SSRP1Q08945 709 aaKnown RBP17.19■□□□□ 0.34
VARS-223ENST00000474643 FUT2Q10981 343 aa17.19■□□□□ 0.34
VARS-223ENST00000474643 FAM160B1Q5W0V3 765 aa17.19■□□□□ 0.34
VARS-223ENST00000474643 KRT40Q6A162 431 aa17.19■□□□□ 0.34
VARS-223ENST00000474643 REXO1Q8N1G1 1221 aaKnown RBP17.19■□□□□ 0.34
VARS-223ENST00000474643 BICD2Q8TD16 824 aa17.19■□□□□ 0.34
VARS-223ENST00000474643 DNAJB3Q8WWF6 145 aa17.19■□□□□ 0.34
VARS-223ENST00000474643 TMEM260Q9NX78 707 aa17.19■□□□□ 0.34
VARS-223ENST00000474643 NFASCO94856 1347 aa17.19■□□□□ 0.34
VARS-223ENST00000474643 KAT6AQ92794 2004 aa17.18■□□□□ 0.34
VARS-223ENST00000474643 PRPF3O43395 683 aaKnown RBP17.18■□□□□ 0.34
VARS-223ENST00000474643 IFNAR1P17181 557 aa17.18■□□□□ 0.34
VARS-223ENST00000474643 GNA11P29992 359 aa17.18■□□□□ 0.34
VARS-223ENST00000474643 SREBF1P36956 1147 aa17.18■□□□□ 0.34
VARS-223ENST00000474643 ACTR2P61160 394 aa17.18■□□□□ 0.34
VARS-223ENST00000474643 PTPROQ16827 1216 aa17.18■□□□□ 0.34
VARS-223ENST00000474643 PFKFB3Q16875 520 aaPredicted RBP17.18■□□□□ 0.34
VARS-223ENST00000474643 TYW1BQ6NUM6 668 aa17.18■□□□□ 0.34
VARS-223ENST00000474643 RUFY4Q6ZNE9 571 aa17.18■□□□□ 0.34
VARS-223ENST00000474643 PLA2G4DQ86XP0 818 aa17.18■□□□□ 0.34
VARS-223ENST00000474643 CKAP2LQ8IYA6 745 aa17.18■□□□□ 0.34
VARS-223ENST00000474643 CCDC148Q8NFR7 591 aa17.18■□□□□ 0.34
VARS-223ENST00000474643 IL17RAQ96F46 866 aa17.18■□□□□ 0.34
VARS-223ENST00000474643 RNF26Q9BY78 433 aaPredicted RBP17.18■□□□□ 0.34
VARS-223ENST00000474643 AGO4Q9HCK5 861 aaKnown RBP17.18■□□□□ 0.34
VARS-223ENST00000474643 COG5Q9UP83 839 aa17.18■□□□□ 0.34
VARS-223ENST00000474643 CDKL5O76039 1030 aa17.17■□□□□ 0.34
VARS-223ENST00000474643 ARP10275 920 aa17.17■□□□□ 0.34
VARS-223ENST00000474643 INSRRP14616 1297 aa17.17■□□□□ 0.34
VARS-223ENST00000474643 POU3F3P20264 500 aaPredicted RBP17.17■□□□□ 0.34
VARS-223ENST00000474643 STAT5BP51692 787 aa17.17■□□□□ 0.34
VARS-223ENST00000474643 ERVK-21P61565 698 aa17.17■□□□□ 0.34
VARS-223ENST00000474643 TFF2Q03403 129 aa17.17■□□□□ 0.34
VARS-223ENST00000474643 IER5Q5VY09 327 aa17.17■□□□□ 0.34
VARS-223ENST00000474643 SPRED2Q7Z698 418 aa17.17■□□□□ 0.34
VARS-223ENST00000474643 CYP2W1Q8TAV3 490 aa17.17■□□□□ 0.34
VARS-223ENST00000474643 HLA-CQ95604 372 aa17.17■□□□□ 0.34
VARS-223ENST00000474643 SAMD11Q96NU1 681 aa17.17■□□□□ 0.34
VARS-223ENST00000474643 TPCN1Q9ULQ1 816 aa17.17■□□□□ 0.34
VARS-223ENST00000474643 CDY2AQ9Y6F7 541 aa17.17■□□□□ 0.34
VARS-223ENST00000474643 TRANK1O15050 2925 aa17.16■□□□□ 0.34
VARS-223ENST00000474643 PTPRSQ13332 1948 aa17.16■□□□□ 0.34
VARS-223ENST00000474643 POTEB3A0JP26 581 aa17.16■□□□□ 0.34
VARS-223ENST00000474643 SLC26A2P50443 739 aa17.16■□□□□ 0.34
VARS-223ENST00000474643 ADAM17P78536 824 aa17.16■□□□□ 0.34
VARS-223ENST00000474643 MRPS6P82932 125 aaKnown RBP17.16■□□□□ 0.34
VARS-223ENST00000474643 SETQ01105 290 aaPredicted RBP17.16■□□□□ 0.34
VARS-223ENST00000474643 FAM26DQ5JW98 314 aa17.16■□□□□ 0.34
VARS-223ENST00000474643 MIS18BP1Q6P0N0 1132 aa17.16■□□□□ 0.34
VARS-223ENST00000474643 POTEBQ6S5H4 581 aa17.16■□□□□ 0.34
VARS-223ENST00000474643 TOP1MTQ969P6 601 aa17.16■□□□□ 0.34
VARS-223ENST00000474643 C17orf80Q9BSJ5 609 aa17.16■□□□□ 0.34
VARS-223ENST00000474643 SUGCTQ9HAC7 445 aa17.16■□□□□ 0.34
VARS-223ENST00000474643 LMCD1Q9NZU5 365 aa17.16■□□□□ 0.34
VARS-223ENST00000474643 COL4A4P53420 1690 aaPredicted RBP17.16■□□□□ 0.34
VARS-223ENST00000474643 MICAL3Q7RTP6 2002 aa17.15■□□□□ 0.34
VARS-223ENST00000474643 CHRNA1P02708 482 aa17.15■□□□□ 0.34
VARS-223ENST00000474643 IBSPP21815 317 aaPredicted RBP17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms