RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 POLD1P28340 1107 aa5.78□□□□□ -1.48
CCDC88A-212ENST00000474059 ABHD18Q0P651 414 aa5.78□□□□□ -1.48
CCDC88A-212ENST00000474059 KRTAP15-1Q3LI76 137 aa5.78□□□□□ -1.48
CCDC88A-212ENST00000474059 TNNI3KQ59H18 835 aa5.78□□□□□ -1.48
CCDC88A-212ENST00000474059 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.78□□□□□ -1.48
CCDC88A-212ENST00000474059 OSBP2Q969R2 916 aa5.78□□□□□ -1.48
CCDC88A-212ENST00000474059 MRRFQ96E11 262 aaKnown RBP5.78□□□□□ -1.48
CCDC88A-212ENST00000474059 TRIM8Q9BZR9 551 aa5.78□□□□□ -1.48
CCDC88A-212ENST00000474059 CD244Q9BZW8 370 aa5.78□□□□□ -1.48
CCDC88A-212ENST00000474059 ASXL2Q76L83 1435 aa5.77□□□□□ -1.49
CCDC88A-212ENST00000474059 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.77□□□□□ -1.49
CCDC88A-212ENST00000474059 DPTQ07507 201 aa5.77□□□□□ -1.49
CCDC88A-212ENST00000474059 SMN1Q16637 294 aaKnown RBP5.77□□□□□ -1.49
CCDC88A-212ENST00000474059 KCTD1Q719H9 257 aa5.77□□□□□ -1.49
CCDC88A-212ENST00000474059 ZNF575Q86XF7 245 aa5.77□□□□□ -1.49
CCDC88A-212ENST00000474059 LDLRAD3Q86YD5 345 aa5.77□□□□□ -1.49
CCDC88A-212ENST00000474059 IFNL2Q8IZJ0 200 aa5.77□□□□□ -1.49
CCDC88A-212ENST00000474059 CELF2-AS1Q8N7Q2 184 aa5.77□□□□□ -1.49
CCDC88A-212ENST00000474059 KCNJ15Q99712 375 aa5.77□□□□□ -1.49
CCDC88A-212ENST00000474059 CARD11Q9BXL7 1154 aa5.77□□□□□ -1.49
CCDC88A-212ENST00000474059 EPN3Q9H201 632 aa5.77□□□□□ -1.49
CCDC88A-212ENST00000474059 ARHGEF4Q9NR80 690 aa5.77□□□□□ -1.49
CCDC88A-212ENST00000474059 BLACEA4D250 179 aa5.76□□□□□ -1.49
CCDC88A-212ENST00000474059 CR2P20023 1033 aa5.76□□□□□ -1.49
CCDC88A-212ENST00000474059 INHBEP58166 350 aa5.76□□□□□ -1.49
CCDC88A-212ENST00000474059 RAC3P60763 192 aa5.76□□□□□ -1.49
CCDC88A-212ENST00000474059 FXNQ16595 210 aa5.76□□□□□ -1.49
CCDC88A-212ENST00000474059 LSM12Q3MHD2 195 aaKnown RBP5.76□□□□□ -1.49
CCDC88A-212ENST00000474059 LARP4Q71RC2 724 aaKnown RBP eCLIP5.76□□□□□ -1.49
CCDC88A-212ENST00000474059 EEPD1Q7L9B9 569 aa5.76□□□□□ -1.49
CCDC88A-212ENST00000474059 ZNF808Q8N4W9 903 aaPredicted RBP5.76□□□□□ -1.49
CCDC88A-212ENST00000474059 CEP89Q96ST8 783 aa5.76□□□□□ -1.49
CCDC88A-212ENST00000474059 PLA2G12BQ9BX93 195 aa5.76□□□□□ -1.49
CCDC88A-212ENST00000474059 HECAQ9UBI9 543 aaPredicted RBP5.76□□□□□ -1.49
CCDC88A-212ENST00000474059 DSEQ9UL01 958 aa5.76□□□□□ -1.49
CCDC88A-212ENST00000474059 FAM90A27PA6NNH2 459 aa5.75□□□□□ -1.49
CCDC88A-212ENST00000474059 U2SURPO15042 1029 aaKnown RBP5.75□□□□□ -1.49
CCDC88A-212ENST00000474059 FGRP09769 529 aa5.75□□□□□ -1.49
CCDC88A-212ENST00000474059 GNAT1P11488 350 aa5.75□□□□□ -1.49
CCDC88A-212ENST00000474059 DBPQ10586 325 aaPredicted RBP5.75□□□□□ -1.49
CCDC88A-212ENST00000474059 NFYCQ13952 458 aa5.75□□□□□ -1.49
CCDC88A-212ENST00000474059 KIZQ2M2Z5 673 aa5.75□□□□□ -1.49
CCDC88A-212ENST00000474059 Q6ZPA2 131 aa5.75□□□□□ -1.49
CCDC88A-212ENST00000474059 POLNQ7Z5Q5 900 aa5.75□□□□□ -1.49
CCDC88A-212ENST00000474059 CCSER2Q9H7U1 834 aa5.75□□□□□ -1.49
CCDC88A-212ENST00000474059 IPPKQ9H8X2 491 aa5.75□□□□□ -1.49
CCDC88A-212ENST00000474059 ZNF408Q9H9D4 720 aa5.75□□□□□ -1.49
CCDC88A-212ENST00000474059 WDR33Q9C0J8 1336 aaKnown RBP5.74□□□□□ -1.49
CCDC88A-212ENST00000474059 ESYT3A0FGR9 886 aa5.74□□□□□ -1.49
CCDC88A-212ENST00000474059 CUTAO60888 179 aa5.74□□□□□ -1.49
CCDC88A-212ENST00000474059 SOD2P04179 222 aa5.74□□□□□ -1.49
CCDC88A-212ENST00000474059 ACRV1P26436 265 aa5.74□□□□□ -1.49
CCDC88A-212ENST00000474059 ETV4P43268 484 aa5.74□□□□□ -1.49
CCDC88A-212ENST00000474059 RRADP55042 308 aa5.74□□□□□ -1.49
CCDC88A-212ENST00000474059 PURAQ00577 322 aaKnown RBP5.74□□□□□ -1.49
CCDC88A-212ENST00000474059 FOXL1Q12952 345 aa5.74□□□□□ -1.49
CCDC88A-212ENST00000474059 STYK1Q6J9G0 422 aa5.74□□□□□ -1.49
CCDC88A-212ENST00000474059 DCAF4Q8WV16 495 aa5.74□□□□□ -1.49
CCDC88A-212ENST00000474059 KIAA1683Q9H0B3 1180 aa5.74□□□□□ -1.49
CCDC88A-212ENST00000474059 GPR85P60893 370 aa5.73□□□□□ -1.49
CCDC88A-212ENST00000474059 IL13RA1P78552 427 aa5.73□□□□□ -1.49
CCDC88A-212ENST00000474059 SPIRE1Q08AE8 756 aa5.73□□□□□ -1.49
CCDC88A-212ENST00000474059 YOD1Q5VVQ6 348 aaPredicted RBP5.73□□□□□ -1.49
CCDC88A-212ENST00000474059 ZNF627Q7L945 461 aa5.73□□□□□ -1.49
CCDC88A-212ENST00000474059 C1orf210Q8IVY1 113 aa5.73□□□□□ -1.49
CCDC88A-212ENST00000474059 OR14A2Q96R54 314 aa5.73□□□□□ -1.49
CCDC88A-212ENST00000474059 ZDHHC5Q9C0B5 715 aa5.73□□□□□ -1.49
CCDC88A-212ENST00000474059 CSRNP2Q9H175 543 aa5.73□□□□□ -1.49
CCDC88A-212ENST00000474059 CDC14BO60729 498 aa5.72□□□□□ -1.49
CCDC88A-212ENST00000474059 MPIG6BO95866 241 aa5.72□□□□□ -1.49
CCDC88A-212ENST00000474059 AMY2AP04746 511 aa5.72□□□□□ -1.49
CCDC88A-212ENST00000474059 FGFR1P11362 822 aa5.72□□□□□ -1.49
CCDC88A-212ENST00000474059 AMY2BP19961 511 aa5.72□□□□□ -1.49
CCDC88A-212ENST00000474059 GPR135Q8IZ08 494 aa5.72□□□□□ -1.49
CCDC88A-212ENST00000474059 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.72□□□□□ -1.49
CCDC88A-212ENST00000474059 LARP4BQ92615 738 aaKnown RBP5.72□□□□□ -1.49
CCDC88A-212ENST00000474059 ZFYVE21Q9BQ24 234 aa5.72□□□□□ -1.49
CCDC88A-212ENST00000474059 CEP72Q9P209 647 aa5.72□□□□□ -1.49
CCDC88A-212ENST00000474059 PRODHO43272 600 aa5.71□□□□□ -1.5
CCDC88A-212ENST00000474059 SSBP05455 408 aaKnown RBP eCLIP5.71□□□□□ -1.5
CCDC88A-212ENST00000474059 PABPC1P11940 636 aaKnown RBP5.71□□□□□ -1.5
CCDC88A-212ENST00000474059 KRT4P19013 534 aa5.71□□□□□ -1.5
CCDC88A-212ENST00000474059 MC4RP32245 332 aa5.71□□□□□ -1.5
CCDC88A-212ENST00000474059 MCM7P33993 719 aa5.71□□□□□ -1.5
CCDC88A-212ENST00000474059 NANOS3P60323 173 aaKnown RBP5.71□□□□□ -1.5
CCDC88A-212ENST00000474059 HNRNPLLQ8WVV9 542 aaKnown RBP5.71□□□□□ -1.5
CCDC88A-212ENST00000474059 NEU4Q8WWR8 484 aaPredicted RBP5.71□□□□□ -1.5
CCDC88A-212ENST00000474059 AGAP2Q99490 1192 aa5.71□□□□□ -1.5
CCDC88A-212ENST00000474059 AARSD1Q9BTE6 412 aaKnown RBP5.71□□□□□ -1.5
CCDC88A-212ENST00000474059 BTBD7Q9P203 1132 aa5.71□□□□□ -1.5
CCDC88A-212ENST00000474059 MAN2B1O00754 1011 aa5.7□□□□□ -1.5
CCDC88A-212ENST00000474059 ARHGAP6O43182 974 aa5.7□□□□□ -1.5
CCDC88A-212ENST00000474059 PTPN1P18031 435 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-212ENST00000474059 COL10A1Q03692 680 aa5.7□□□□□ -1.5
CCDC88A-212ENST00000474059 STILQ15468 1287 aa5.7□□□□□ -1.5
CCDC88A-212ENST00000474059 SGSM3Q96HU1 749 aa5.7□□□□□ -1.5
CCDC88A-212ENST00000474059 ZNF703Q9H7S9 590 aaPredicted RBP5.7□□□□□ -1.5
CCDC88A-212ENST00000474059 MMRN2Q9H8L6 949 aa5.7□□□□□ -1.5
CCDC88A-212ENST00000474059 AGO3Q9H9G7 860 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-212ENST00000474059 CAPN10Q9HC96 672 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms