RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 F5H6K3 240 aa6.37□□□□□ -1.39
HMGB1-207ENST00000468384 ADCY6O43306 1168 aa6.37□□□□□ -1.39
HMGB1-207ENST00000468384 NARSO43776 548 aaKnown RBP6.37□□□□□ -1.39
HMGB1-207ENST00000468384 ZNF806P0C7X5 589 aa6.37□□□□□ -1.39
HMGB1-207ENST00000468384 CSRP1P21291 193 aaKnown RBP6.37□□□□□ -1.39
HMGB1-207ENST00000468384 BMPR1AP36894 532 aa6.37□□□□□ -1.39
HMGB1-207ENST00000468384 ABCG1P45844 678 aa6.37□□□□□ -1.39
HMGB1-207ENST00000468384 IKBKEQ14164 716 aa6.37□□□□□ -1.39
HMGB1-207ENST00000468384 CDC42EP5Q6NZY7 148 aa6.37□□□□□ -1.39
HMGB1-207ENST00000468384 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.37□□□□□ -1.39
HMGB1-207ENST00000468384 SH3BP5LQ7L8J4 393 aa6.37□□□□□ -1.39
HMGB1-207ENST00000468384 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.37□□□□□ -1.39
HMGB1-207ENST00000468384 MYOCDQ8IZQ8 938 aa6.37□□□□□ -1.39
HMGB1-207ENST00000468384 MOV10L1Q9BXT6 1211 aaKnown RBP6.37□□□□□ -1.39
HMGB1-207ENST00000468384 BCO2Q9BYV7 579 aa6.37□□□□□ -1.39
HMGB1-207ENST00000468384 FOXQ1Q9C009 403 aa6.37□□□□□ -1.39
HMGB1-207ENST00000468384 TRIM4Q9C037 500 aa6.37□□□□□ -1.39
HMGB1-207ENST00000468384 TFIP11Q9UBB9 837 aaKnown RBP6.37□□□□□ -1.39
HMGB1-207ENST00000468384 CELSR2Q9HCU4 2923 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 CABIN1Q9Y6J0 2220 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 C19orf81C9J6K1 198 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 ERCC3P19447 782 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 DNAJB1P25685 340 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 TNFRSF8P28908 595 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 EIF4A1P60842 406 aaKnown RBP6.36□□□□□ -1.39
HMGB1-207ENST00000468384 NKX3-2P78367 333 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 TRIM28Q13263 835 aaKnown RBP6.36□□□□□ -1.39
HMGB1-207ENST00000468384 SIM2Q14190 667 aaPredicted RBP6.36□□□□□ -1.39
HMGB1-207ENST00000468384 TAF7Q15545 349 aaPredicted RBP6.36□□□□□ -1.39
HMGB1-207ENST00000468384 LRRFIP1Q32MZ4 808 aaKnown RBP6.36□□□□□ -1.39
HMGB1-207ENST00000468384 CDCA8Q53HL2 280 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 ANKRD54Q6NXT1 300 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 HHIPL2Q6UWX4 724 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 LINC00114Q6XXX2 140 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 NFXL1Q6ZNB6 911 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 ZSCAN29Q8IWY8 852 aaPredicted RBP6.36□□□□□ -1.39
HMGB1-207ENST00000468384 PIP4K2CQ8TBX8 421 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 NECTIN4Q96NY8 510 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 OSBPL5Q9H0X9 879 aaPredicted RBP6.36□□□□□ -1.39
HMGB1-207ENST00000468384 GREM2Q9H772 168 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 TLE6Q9H808 572 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 TPSG1Q9NRR2 321 aa6.36□□□□□ -1.39
HMGB1-207ENST00000468384 SDK1Q7Z5N4 2213 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 MROH5Q6ZUA9 1318 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 SHISA7A6NL88 538 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 PER2O15055 1255 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 TAF5LO75529 589 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 CXCL10P02778 98 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 AMHP03971 560 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 LINC00271P0C7V0 271 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 ADRA1BP35368 520 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 IGHMBP2P38935 993 aaKnown RBP6.35□□□□□ -1.39
HMGB1-207ENST00000468384 TECP42680 631 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 FGD1P98174 961 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 CHRNDQ07001 517 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 BFSP2Q13515 415 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 ARID5BQ14865 1188 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 NR6A1Q15406 480 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 C1orf229Q6ZS94 237 aaPredicted RBP6.35□□□□□ -1.39
HMGB1-207ENST00000468384 CHCHD4Q8N4Q1 142 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 BAP1Q92560 729 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 MYD88Q99836 296 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 CYP26B1Q9NR63 512 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 ZHX1Q9UKY1 873 aaPredicted RBP6.35□□□□□ -1.39
HMGB1-207ENST00000468384 PLAGL2Q9UPG8 496 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 JMJD1CQ15652 2540 aa6.35□□□□□ -1.39
HMGB1-207ENST00000468384 TANC1Q9C0D5 1861 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 FRMPD4Q14CM0 1322 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 DDTLA6NHG4 134 aaPredicted RBP6.34□□□□□ -1.39
HMGB1-207ENST00000468384 FAM196BA6NMK8 535 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 C4orf47A7E2U8 309 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 USP17L15C9J2P7 530 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 USP17L13C9JLJ4 530 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 USP17L11C9JVI0 530 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 USP17L18D6R9N7 530 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 USP17L22D6RA61 530 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 USP17L17D6RBQ6 530 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 USP17L19D6RCP7 530 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 USP17L20D6RJB6 530 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 LGR5O75473 907 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 ATG7O95352 703 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 C6P13671 934 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 HOXB4P17483 251 aaPredicted RBP6.34□□□□□ -1.39
HMGB1-207ENST00000468384 VARSP26640 1264 aaKnown RBP6.34□□□□□ -1.39
HMGB1-207ENST00000468384 GRNP28799 593 aaKnown RBP6.34□□□□□ -1.39
HMGB1-207ENST00000468384 USP17L24Q0WX57 530 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 DAB2IPQ5VWQ8 1189 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 TMEM184AQ6ZMB5 413 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 PRICKLE2Q7Z3G6 844 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 FIBCD1Q8N539 461 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 SEMA4CQ9C0C4 833 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 KCNK12Q9HB15 430 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 PRMT8Q9NR22 394 aaPredicted RBP6.34□□□□□ -1.39
HMGB1-207ENST00000468384 ARHGEF3Q9NR81 526 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 MAFBQ9Y5Q3 323 aaPredicted RBP6.34□□□□□ -1.39
HMGB1-207ENST00000468384 NLRC5Q86WI3 1866 aa6.34□□□□□ -1.39
HMGB1-207ENST00000468384 SPEF2Q9C093 1822 aa6.34□□□□□ -1.4
HMGB1-207ENST00000468384 SVILO95425 2214 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 CLSPNQ9HAW4 1339 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 FSD2A1L4K1 749 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms