RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 ALDH7A1P49419 539 aaKnown RBP3.2□□□□□ -1.9
USP40-211ENST00000464956 SATB1Q01826 763 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 CNTN2Q02246 1040 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 MECOMQ03112 1051 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 PDE4BQ07343 736 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 SEPT2Q15019 361 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 PPP2R5BQ15173 497 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 ELF2Q15723 593 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 C6orf132Q5T0Z8 1188 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 PDXDC2PQ6P474 469 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 C15orf39Q6ZRI6 1047 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 TPRG1Q6ZUI0 275 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 ATG9AQ7Z3C6 839 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 KBTBD6Q86V97 674 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 MAPKAPK5Q8IW41 473 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 CPXCR1Q8N123 301 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 ZNF687Q8N1G0 1237 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 MRPL43Q8N983 215 aaKnown RBP3.2□□□□□ -1.9
USP40-211ENST00000464956 TGFBRAP1Q8WUH2 860 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 GAB3Q8WWW8 586 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 ADAMTS14Q8WXS8 1223 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 LPIN2Q92539 896 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 MOCOSQ96EN8 888 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 MED8Q96G25 268 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 PCGF6Q9BYE7 350 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 SEMA4CQ9C0C4 833 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 ARHGEF10LQ9HCE6 1279 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 HDAC6Q9UBN7 1215 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 SEPT9Q9UHD8 586 aaPredicted RBP3.2□□□□□ -1.9
USP40-211ENST00000464956 SERPINB13Q9UIV8 391 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 DDX41Q9UJV9 622 aaKnown RBP3.2□□□□□ -1.9
USP40-211ENST00000464956 PRR12Q9ULL5 1215 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 MAN2B2Q9Y2E5 1009 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 RIPK3Q9Y572 518 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 NUMBLQ9Y6R0 609 aa3.2□□□□□ -1.9
USP40-211ENST00000464956 FLT1P17948 1338 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 UPK3BL1B0FP48 263 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 UPK3BL2E5RIL1 263 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 ANHXE9PGG2 379 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 CDX4O14627 284 aaPredicted RBP3.19□□□□□ -1.9
USP40-211ENST00000464956 ENPP3O14638 875 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 TERTO14746 1132 aaKnown RBP3.19□□□□□ -1.9
USP40-211ENST00000464956 ATP2A1O14983 1001 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 B4GALT3O60512 393 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 N4BP1O75113 896 aaKnown RBP3.19□□□□□ -1.9
USP40-211ENST00000464956 ZBED4O75132 1171 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 CTSHP09668 335 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 LAG3P18627 525 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 FGFR2P21802 821 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 RIPK4P57078 832 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 CXADRP78310 365 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 ARHGAP4P98171 946 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 PLCB3Q01970 1234 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 CREB5Q02930 508 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 LMAN2Q12907 356 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 HTR4Q13639 388 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 EML3Q32P44 896 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 KIAA1755Q5JYT7 1200 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 CCDC30Q5VVM6 783 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 ELMSAN1Q6PJG2 1045 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 SERINC5Q86VE9 423 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 WDR5BQ86VZ2 330 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 PPFIBP1Q86W92 1011 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 NPAS4Q8IUM7 802 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 SPEM1Q8N4L4 309 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 HDDC3Q8N4P3 179 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 VGLL2Q8N8G2 317 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 REPS2Q8NFH8 660 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 LINS1Q8NG48 757 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 SH3RF3Q8TEJ3 882 aaPredicted RBP3.19□□□□□ -1.9
USP40-211ENST00000464956 BAP1Q92560 729 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 WNT8BQ93098 351 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 ALG1Q9BT22 464 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 EHD4Q9H223 541 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 ACAD9Q9H845 621 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 VCPKMTQ9H867 229 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 HOMER2Q9NSB8 354 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 FBXO28Q9NVF7 368 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP3.19□□□□□ -1.9
USP40-211ENST00000464956 PLEKHB1Q9UF11 243 aaPredicted RBP3.19□□□□□ -1.9
USP40-211ENST00000464956 SAP30BPQ9UHR5 308 aaKnown RBP3.19□□□□□ -1.9
USP40-211ENST00000464956 LRFN2Q9ULH4 789 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 NDRG2Q9UN36 371 aaKnown RBP3.19□□□□□ -1.9
USP40-211ENST00000464956 APOBEC2Q9Y235 224 aaKnown RBP3.19□□□□□ -1.9
USP40-211ENST00000464956 CLUHO75153 1309 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 IL16Q14005 1332 aa3.19□□□□□ -1.9
USP40-211ENST00000464956 SMG1Q96Q15 3661 aaKnown RBP3.18□□□□□ -1.9
USP40-211ENST00000464956 TRABD2BA6NFA1 517 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 C2orf71A6NGG8 1288 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 MAN2B1O00754 1011 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 AKAP3O75969 853 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 RHOBTB1O94844 696 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 PAPSS2O95340 614 aaPredicted RBP3.18□□□□□ -1.9
USP40-211ENST00000464956 C8AP07357 584 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 LAMP2P13473 410 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 EPCAMP16422 314 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 GRNP28799 593 aaKnown RBP3.18□□□□□ -1.9
USP40-211ENST00000464956 HOXA6P31267 233 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 GUCY1A2P33402 732 aa3.18□□□□□ -1.9
USP40-211ENST00000464956 PPM1AP35813 382 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms