RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 TBC1D8O95759 1140 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 NBPF9Q3BBW0 867 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 PPP4R3AQ6IN85 833 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 LEKR1Q6ZMV7 388 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 ELMO3Q96BJ8 720 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 HOOK2Q96ED9 719 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 RUSC1Q9BVN2 902 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 NYAP2Q9P242 653 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 BCCIPQ9P287 314 aaKnown RBP eCLIP13.15□□□□□ -0.3
SMPD4-213ENST00000454468 SUGT1Q9Y2Z0 365 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 GOLGA8IPA6NC78 632 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 GOLGA8JA6NMD2 632 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 EML1O00423 815 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 KCNK3O14649 394 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 MEIS2O14770 477 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 RPL13P26373 211 aaKnown RBP13.15□□□□□ -0.3
SMPD4-213ENST00000454468 VPS36Q86VN1 386 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 RETREG2Q8NC44 543 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 TRIM58Q8NG06 486 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 ROBO3Q96MS0 1386 aa13.15□□□□□ -0.31
SMPD4-213ENST00000454468 CCDC151A5D8V7 595 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 CALUO43852 315 aaPredicted RBP13.14□□□□□ -0.31
SMPD4-213ENST00000454468 MAP9Q49MG5 647 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 C8orf74Q6P047 294 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 MIER3Q7Z3K6 550 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 SCFD1Q8WVM8 642 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 DNAJC7Q99615 494 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 NAP1L4Q99733 375 aaKnown RBP13.14□□□□□ -0.31
SMPD4-213ENST00000454468 GCNT4Q9P109 453 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 SHTN1A0MZ66 631 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 CCDC66A2RUB6 948 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 TMEM150BA6NC51 233 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 CASP8Q14790 479 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 BRD3Q15059 726 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 PACSIN1Q9BY11 444 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 KCND1Q9NSA2 647 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 CHORDC1Q9UHD1 332 aaPredicted RBP13.14□□□□□ -0.31
SMPD4-213ENST00000454468 FRMD4BQ9Y2L6 1034 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 K7ENM7 598 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 PALMO75781 387 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 FOSP01100 380 aaPredicted RBP13.14□□□□□ -0.31
SMPD4-213ENST00000454468 HARSP12081 509 aaKnown RBP13.14□□□□□ -0.31
SMPD4-213ENST00000454468 GABPB1Q06547 395 aaPredicted RBP13.14□□□□□ -0.31
SMPD4-213ENST00000454468 RRP1BQ14684 758 aaKnown RBP13.14□□□□□ -0.31
SMPD4-213ENST00000454468 CCDC170Q8IYT3 715 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 TSGA10Q9BZW7 698 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 ANKZF1Q9H8Y5 726 aa13.14□□□□□ -0.31
SMPD4-213ENST00000454468 ZNF70Q9UC06 446 aaPredicted RBP13.14□□□□□ -0.31
SMPD4-213ENST00000454468 RGL2O15211 777 aa13.13□□□□□ -0.31
SMPD4-213ENST00000454468 BRD2P25440 801 aaKnown RBP13.13□□□□□ -0.31
SMPD4-213ENST00000454468 USP11P51784 963 aa13.13□□□□□ -0.31
SMPD4-213ENST00000454468 CEP89Q96ST8 783 aa13.13□□□□□ -0.31
SMPD4-213ENST00000454468 FAM107BQ9H098 131 aa13.13□□□□□ -0.31
SMPD4-213ENST00000454468 EHMT1Q9H9B1 1298 aa13.13□□□□□ -0.31
SMPD4-213ENST00000454468 EIF3CLB5ME19 914 aaKnown RBP13.13□□□□□ -0.31
SMPD4-213ENST00000454468 NR3C1P04150 777 aa13.13□□□□□ -0.31
SMPD4-213ENST00000454468 SMARCA1P28370 1054 aa13.13□□□□□ -0.31
SMPD4-213ENST00000454468 PSMD2Q13200 908 aa13.13□□□□□ -0.31
SMPD4-213ENST00000454468 COG2Q14746 738 aa13.13□□□□□ -0.31
SMPD4-213ENST00000454468 LDHDQ86WU2 507 aa13.13□□□□□ -0.31
SMPD4-213ENST00000454468 BICD1Q96G01 975 aa13.13□□□□□ -0.31
SMPD4-213ENST00000454468 EIF3CQ99613 913 aaKnown RBP13.13□□□□□ -0.31
SMPD4-213ENST00000454468 ARP10275 920 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 DPEP1P16444 411 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 SF3A3Q12874 501 aaKnown RBP eCLIP13.12□□□□□ -0.311e-6■■■■□ 22.7
SMPD4-213ENST00000454468 KNOP1Q1ED39 458 aaKnown RBP13.12□□□□□ -0.31
SMPD4-213ENST00000454468 PHLDB2Q86SQ0 1253 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 FAM186BQ8IYM0 893 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 DNAJC19Q96DA6 116 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 MYH15Q9Y2K3 1946 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 ANKRD65E5RJM6 399 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 AFPP02771 609 aaKnown RBP13.12□□□□□ -0.31
SMPD4-213ENST00000454468 KRT13P13646 458 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 SSR1P43307 286 aaKnown RBP13.12□□□□□ -0.31
SMPD4-213ENST00000454468 FAM102BQ5T8I3 360 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 RSRC2Q7L4I2 434 aaKnown RBP13.12□□□□□ -0.31
SMPD4-213ENST00000454468 PURBQ96QR8 312 aaKnown RBP13.12□□□□□ -0.31
SMPD4-213ENST00000454468 P2RX7Q99572 595 aaKnown RBP13.12□□□□□ -0.31
SMPD4-213ENST00000454468 MRPL11Q9Y3B7 192 aaKnown RBP13.12□□□□□ -0.31
SMPD4-213ENST00000454468 YDJCA8MPS7 323 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 BACH1O14867 736 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 ZNF263O14978 683 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 PPP1R18Q6NYC8 613 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 PDXDC1Q6P996 788 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 SAMD7Q7Z3H4 446 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 MAATS1Q7Z4T9 603 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 SUPT20HQ8NEM7 779 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 ERGIC2Q96RQ1 377 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 KRT12Q99456 494 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 LRRC1Q9BTT6 524 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 AP1M1Q9BXS5 423 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 MYO1AQ9UBC5 1043 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 PLAGL2Q9UPG8 496 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 LRP5O75197 1615 aa13.12□□□□□ -0.31
SMPD4-213ENST00000454468 MYH8P13535 1937 aa13.11□□□□□ -0.31
SMPD4-213ENST00000454468 A0A087X0T9 212 aa13.11□□□□□ -0.31
SMPD4-213ENST00000454468 FAM228BP0C875 321 aa13.11□□□□□ -0.31
SMPD4-213ENST00000454468 GUCY2DQ02846 1103 aa13.11□□□□□ -0.31
SMPD4-213ENST00000454468 AP3B2Q13367 1082 aa13.11□□□□□ -0.31
SMPD4-213ENST00000454468 RASA3Q14644 834 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms