RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 DNAJC14Q6Y2X3 702 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-214ENST00000454018 TLK2Q86UE8 772 aa9.91□□□□□ -0.82
SYNE1-214ENST00000454018 PDGFCQ9NRA1 345 aa9.91□□□□□ -0.82
SYNE1-214ENST00000454018 DDX20Q9UHI6 824 aaKnown RBP9.91□□□□□ -0.82
SYNE1-214ENST00000454018 DDX41Q9UJV9 622 aaKnown RBP9.91□□□□□ -0.82
SYNE1-214ENST00000454018 Q9Y3F1 56 aa9.91□□□□□ -0.82
SYNE1-214ENST00000454018 ATP6V1DQ9Y5K8 247 aa9.91□□□□□ -0.82
SYNE1-214ENST00000454018 NFASCO94856 1347 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-214ENST00000454018 IPO5O00410 1097 aaKnown RBP9.9□□□□□ -0.82
SYNE1-214ENST00000454018 LAD1O00515 517 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 WNT7AO00755 349 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 ADCY6O43306 1168 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 DUSP11O75319 330 aaKnown RBP9.9□□□□□ -0.82
SYNE1-214ENST00000454018 ARIH2O95376 493 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 GH1P01241 217 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 CCL5P13501 91 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 KCNA2P16389 499 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 SMPD1P17405 629 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 ATP2B1P20020 1258 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 MCM7P33993 719 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 SLFN12Q8IYM2 578 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 ETNPPLQ8TBG4 499 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 EMID1Q96A84 441 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-214ENST00000454018 FAM20AQ96MK3 541 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 SDF4Q9BRK5 362 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 ZNF577Q9BSK1 485 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 RNF208Q9H0X6 261 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 UNC93B1Q9H1C4 597 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 AGO4Q9HCK5 861 aaKnown RBP9.9□□□□□ -0.82
SYNE1-214ENST00000454018 KCNMB3Q9NPA1 279 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.9□□□□□ -0.82
SYNE1-214ENST00000454018 TCEAL9Q9UHQ7 104 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 CEP131Q9UPN4 1083 aa9.9□□□□□ -0.82
SYNE1-214ENST00000454018 TRIP12Q14669 1992 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-214ENST00000454018 SYNRGQ9UMZ2 1314 aa9.9□□□□□ -0.83
SYNE1-214ENST00000454018 MYH11P35749 1972 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 MSH4O15457 936 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 FARP2O94887 1054 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-214ENST00000454018 GGPS1O95749 300 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 ARP10275 920 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 MTFR1Q15390 333 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 CALCRLQ16602 461 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 LY6KQ17RY6 165 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 CELF3Q5SZQ8 465 aaKnown RBP9.89□□□□□ -0.83
SYNE1-214ENST00000454018 ATL3Q6DD88 541 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 METTL7BQ6UX53 244 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 SLC5A5Q92911 643 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 LENG1Q96BZ8 264 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-214ENST00000454018 ZNF396Q96N95 335 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-214ENST00000454018 RIT2Q99578 217 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 UPF3AQ9H1J1 476 aaKnown RBP9.89□□□□□ -0.83
SYNE1-214ENST00000454018 SPC25Q9HBM1 224 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 JPH1Q9HDC5 661 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-214ENST00000454018 TBC1D22BQ9NU19 505 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 CHMP5Q9NZZ3 219 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 KIAA1522Q9P206 1035 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-214ENST00000454018 ZDHHC9Q9Y397 364 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 PCDHB6Q9Y5E3 794 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 BRCA2P51587 3418 aa9.89□□□□□ -0.83
SYNE1-214ENST00000454018 GAS7O60861 476 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 BAG4O95429 457 aaKnown RBP9.88□□□□□ -0.83
SYNE1-214ENST00000454018 OR52Z1P0C646 297 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 SKIP12755 728 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 CAPN2P17655 700 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 CST5P28325 142 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-214ENST00000454018 PRPHP41219 470 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 CPT1AP50416 773 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 KRT76Q01546 638 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 SP2Q02086 613 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 ARHGAP1Q07960 439 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 ITGB3BPQ13352 177 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-214ENST00000454018 LAMC2Q13753 1193 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 ZNF174Q15697 407 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 LRCH2Q5VUJ6 765 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 DHX37Q8IY37 1157 aaKnown RBP9.88□□□□□ -0.83
SYNE1-214ENST00000454018 DEPDC4Q8N2C3 294 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 OR6J1Q8NGC5 347 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 PPTC7Q8NI37 304 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 KCNK17Q96T54 332 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 TEKT3Q9BXF9 490 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 AP5M1Q9H0R1 490 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 XPNPEP3Q9NQH7 507 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 PKD2L1Q9P0L9 805 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 SLC9A2Q9UBY0 812 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 EVPLQ92817 2033 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 ALPK3Q96L96 1907 aa9.88□□□□□ -0.83
SYNE1-214ENST00000454018 NOP56O00567 594 aaKnown RBP9.87□□□□□ -0.83
SYNE1-214ENST00000454018 DHX15O43143 795 aaKnown RBP9.87□□□□□ -0.83
SYNE1-214ENST00000454018 MARCH6O60337 910 aa9.87□□□□□ -0.83
SYNE1-214ENST00000454018 ATP9AO75110 1047 aa9.87□□□□□ -0.83
SYNE1-214ENST00000454018 ADAMTS4O75173 837 aa9.87□□□□□ -0.83
SYNE1-214ENST00000454018 PSMD10O75832 226 aa9.87□□□□□ -0.83
SYNE1-214ENST00000454018 GJB1P08034 283 aa9.87□□□□□ -0.83
SYNE1-214ENST00000454018 NASPP49321 788 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-214ENST00000454018 GJA9P57773 515 aa9.87□□□□□ -0.83
SYNE1-214ENST00000454018 NKX3-2P78367 333 aa9.87□□□□□ -0.83
SYNE1-214ENST00000454018 ATP2C1P98194 919 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-214ENST00000454018 SF3A1Q15459 793 aaKnown RBP9.87□□□□□ -0.83
SYNE1-214ENST00000454018 CRTC2Q53ET0 693 aaPredicted RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms