RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 USP38Q8NB14 1042 aa8.89□□□□□ -0.99
CD44-211ENST00000442151 BICD2Q8TD16 824 aa8.89□□□□□ -0.99
CD44-211ENST00000442151 ARNTL2Q8WYA1 636 aa8.89□□□□□ -0.99
CD44-211ENST00000442151 GLG1Q92896 1179 aa8.89□□□□□ -0.99
CD44-211ENST00000442151 RNPEPQ9H4A4 650 aa8.89□□□□□ -0.99
CD44-211ENST00000442151 SENP2Q9HC62 589 aa8.89□□□□□ -0.99
CD44-211ENST00000442151 RWDD3Q9Y3V2 267 aa8.89□□□□□ -0.99
CD44-211ENST00000442151 SQORQ9Y6N5 450 aa8.89□□□□□ -0.99
CD44-211ENST00000442151 MYH7BA7E2Y1 1941 aa8.88□□□□□ -0.99
CD44-211ENST00000442151 NFASCO94856 1347 aa8.88□□□□□ -0.99
CD44-211ENST00000442151 REC8O95072 547 aa8.88□□□□□ -0.99
CD44-211ENST00000442151 ADCY7P51828 1080 aa8.88□□□□□ -0.99
CD44-211ENST00000442151 ARHGAP4P98171 946 aa8.88□□□□□ -0.99
CD44-211ENST00000442151 TRIM71Q2Q1W2 868 aaKnown RBP8.88□□□□□ -0.99
CD44-211ENST00000442151 TPRNQ4KMQ1 711 aa8.88□□□□□ -0.99
CD44-211ENST00000442151 PLEKHG4Q58EX7 1191 aa8.88□□□□□ -0.99
CD44-211ENST00000442151 NIPA1Q7RTP0 329 aa8.88□□□□□ -0.99
CD44-211ENST00000442151 MICU3Q86XE3 530 aa8.88□□□□□ -0.99
CD44-211ENST00000442151 IL31RAQ8NI17 732 aa8.88□□□□□ -0.99
CD44-211ENST00000442151 DHX38Q92620 1227 aaKnown RBP8.88□□□□□ -0.99
CD44-211ENST00000442151 MYL10Q9BUA6 226 aa8.88□□□□□ -0.99
CD44-211ENST00000442151 C6orf50Q9HD87 102 aa8.88□□□□□ -0.99
CD44-211ENST00000442151 RIC8AQ9NPQ8 531 aa8.88□□□□□ -0.99
CD44-211ENST00000442151 UBIAD1Q9Y5Z9 338 aa8.88□□□□□ -0.99
CD44-211ENST00000442151 VCANP13611 3396 aa8.88□□□□□ -0.99
CD44-211ENST00000442151 GOLGA8AA7E2F4 631 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 GOLGA8BA8MQT2 603 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 NCK2O43639 380 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 NBNO60934 754 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 PLEKHA8P1O95397 391 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 MYOGP15173 224 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 GNA11P29992 359 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 HOXC8P31273 242 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 ERVK-21P61565 698 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 EXOSC10Q01780 885 aaKnown RBP8.87□□□□□ -0.99
CD44-211ENST00000442151 ADGRE1Q14246 886 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 PUS10Q3MIT2 529 aaKnown RBP8.87□□□□□ -0.99
CD44-211ENST00000442151 FAM160B1Q5W0V3 765 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 MICALL1Q8N3F8 863 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 NME8Q8N427 588 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 DBF4BQ8NFT6 615 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 HLA-CQ95604 372 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 MXRA8Q9BRK3 442 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 SETD4Q9NVD3 440 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 NAP1L2Q9ULW6 460 aaPredicted RBP8.87□□□□□ -0.99
CD44-211ENST00000442151 MTCH2Q9Y6C9 303 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 V9GY48 417 aaPredicted RBP8.87□□□□□ -0.99
CD44-211ENST00000442151 SMCO2A6NFE2 343 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 TREHO43280 583 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 SORBS3O60504 671 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 TCF7P36402 384 aaPredicted RBP8.87□□□□□ -0.99
CD44-211ENST00000442151 PPFIA1Q13136 1202 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 SLC35G1Q2M3R5 365 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 CPLX2Q6PUV4 134 aaKnown RBP8.87□□□□□ -0.99
CD44-211ENST00000442151 APOA5Q6Q788 366 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 BLOC1S2Q6QNY1 142 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 PLPPR4Q7Z2D5 763 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 CCDC82Q8N4S0 544 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 VWCEQ96DN2 955 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 CCDC136Q96JN2 1154 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 YME1L1Q96TA2 773 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 FTHL17Q9BXU8 183 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 C22orf23Q9BZE7 217 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 JPH1Q9HDC5 661 aaPredicted RBP8.87□□□□□ -0.99
CD44-211ENST00000442151 SLC9A2Q9UBY0 812 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 FAM50BQ9Y247 325 aa8.87□□□□□ -0.99
CD44-211ENST00000442151 LAMA2P24043 3122 aaKnown RBP8.86□□□□□ -0.99
CD44-211ENST00000442151 KLF18A0A0U1RQI7 1052 aa8.86□□□□□ -0.99
CD44-211ENST00000442151 RB1P06400 928 aa8.86□□□□□ -0.99
CD44-211ENST00000442151 STAG3L1P0CL83 205 aa8.86□□□□□ -0.99
CD44-211ENST00000442151 KCNA2P16389 499 aa8.86□□□□□ -0.99
CD44-211ENST00000442151 METAP2P50579 478 aaKnown RBP eCLIP8.86□□□□□ -0.99
CD44-211ENST00000442151 ZNF200P98182 395 aaPredicted RBP8.86□□□□□ -0.99
CD44-211ENST00000442151 SP4Q02446 784 aa8.86□□□□□ -0.99
CD44-211ENST00000442151 CEP55Q53EZ4 464 aa8.86□□□□□ -0.99
CD44-211ENST00000442151 MYOCDQ8IZQ8 938 aa8.86□□□□□ -0.99
CD44-211ENST00000442151 PPP1R13LQ8WUF5 828 aa8.86□□□□□ -0.99
CD44-211ENST00000442151 TOP1MTQ969P6 601 aa8.86□□□□□ -0.99
CD44-211ENST00000442151 CTAGE1Q96RT6 745 aa8.86□□□□□ -0.99
CD44-211ENST00000442151 PRKD2Q9BZL6 878 aa8.86□□□□□ -0.99
CD44-211ENST00000442151 PRDM6Q9NQX0 595 aa8.86□□□□□ -0.99
CD44-211ENST00000442151 TBC1D22BQ9NU19 505 aa8.86□□□□□ -0.99
CD44-211ENST00000442151 BARHL2Q9NY43 387 aa8.86□□□□□ -0.99
CD44-211ENST00000442151 TAF6LQ9Y6J9 622 aa8.86□□□□□ -0.99
CD44-211ENST00000442151 TRIP12Q14669 1992 aaPredicted RBP8.85□□□□□ -0.99
CD44-211ENST00000442151 NEFLP07196 543 aa8.85□□□□□ -0.99
CD44-211ENST00000442151 STAT5BP51692 787 aa8.85□□□□□ -0.99
CD44-211ENST00000442151 HTRA4P83105 476 aaPredicted RBP8.85□□□□□ -0.99
CD44-211ENST00000442151 SEMA3FQ13275 785 aa8.85□□□□□ -0.99
CD44-211ENST00000442151 GRB10Q13322 594 aa8.85□□□□□ -0.99
CD44-211ENST00000442151 GPNMBQ14956 572 aa8.85□□□□□ -0.99
CD44-211ENST00000442151 GRIK4Q16099 956 aa8.85□□□□□ -0.99
CD44-211ENST00000442151 MIS18BP1Q6P0N0 1132 aa8.85□□□□□ -0.99
CD44-211ENST00000442151 FAM177A1Q8N128 213 aaPredicted RBP8.85□□□□□ -0.99
CD44-211ENST00000442151 FBXL16Q8N461 479 aa8.85□□□□□ -0.99
CD44-211ENST00000442151 CCDC148Q8NFR7 591 aa8.85□□□□□ -0.99
CD44-211ENST00000442151 GPKOWQ92917 476 aaPredicted RBP eCLIP8.85□□□□□ -0.99
CD44-211ENST00000442151 IL17RAQ96F46 866 aa8.85□□□□□ -0.99
CD44-211ENST00000442151 UHRF1Q96T88 793 aaPredicted RBP8.85□□□□□ -0.99
CD44-211ENST00000442151 IFIH1Q9BYX4 1025 aaKnown RBP8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms