RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 RETREG2Q8NC44 543 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 FAM76AQ8TAV0 307 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 FAM163AQ96GL9 167 aaPredicted RBP7.91□□□□□ -1.14
COL28A1-202ENST00000430711 GPBP1L1Q9HC44 474 aaPredicted RBP7.91□□□□□ -1.14
COL28A1-202ENST00000430711 PANK4Q9NVE7 773 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 SEC63Q9UGP8 760 aaKnown RBP7.91□□□□□ -1.14
COL28A1-202ENST00000430711 CHORDC1Q9UHD1 332 aaPredicted RBP7.91□□□□□ -1.14
COL28A1-202ENST00000430711 DDX25Q9UHL0 483 aaKnown RBP7.91□□□□□ -1.14
COL28A1-202ENST00000430711 IGSF9BQ9UPX0 1349 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 LTBP1Q14766 1721 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 IPO7O95373 1038 aaKnown RBP7.9□□□□□ -1.14
COL28A1-202ENST00000430711 MYL1P05976 194 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 SNHG28P0DPA3 235 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 CYP11B2P19099 503 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 SLC20A2Q08357 652 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 COG2Q14746 738 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 CCDC40Q4G0X9 1142 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 FAM26FQ5R3K3 315 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 KCNV1Q6PIU1 500 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 GPBP1Q86WP2 473 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 PALB2Q86YC2 1186 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 CPNE8Q86YQ8 564 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 TRIM59Q8IWR1 403 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 ELMO3Q96BJ8 720 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.9□□□□□ -1.14
COL28A1-202ENST00000430711 CUEDC2Q9H467 287 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.9□□□□□ -1.14
COL28A1-202ENST00000430711 COL4A3BPQ9Y5P4 624 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 ZNF831Q5JPB2 1677 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 ATAD5Q96QE3 1844 aa7.9□□□□□ -1.14
COL28A1-202ENST00000430711 RBAK-RBAKDNI3L0D1 243 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 BAG3O95817 575 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 GNA11P29992 359 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 CYP4A11Q02928 519 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 DDR1Q08345 913 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 SPIRE1Q08AE8 756 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 ZNF543Q08ER8 600 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 PABPC4Q13310 644 aaKnown RBP eCLIP7.9□□□□□ -1.15
COL28A1-202ENST00000430711 DOK7Q18PE1 504 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 COBLL1Q53SF7 1204 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 SPTY2D1Q68D10 685 aaPredicted RBP7.9□□□□□ -1.15
COL28A1-202ENST00000430711 GALNT17Q6IS24 598 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 AADACL2Q6P093 401 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 BARGINQ6ZT62 677 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 MYOCDQ8IZQ8 938 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 IQCKQ8N0W5 287 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 CNBD1Q8NA66 436 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 TBC1D16Q8TBP0 767 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 BCAS4Q8TDM0 211 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 CDK5RAP3Q96JB5 506 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 CELF4Q9BZC1 486 aaKnown RBP7.9□□□□□ -1.15
COL28A1-202ENST00000430711 NYXQ9GZU5 481 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 GDF3Q9NR23 364 aa7.9□□□□□ -1.15
COL28A1-202ENST00000430711 THRAP3Q9Y2W1 955 aaKnown RBP7.9□□□□□ -1.15
COL28A1-202ENST00000430711 GAKO14976 1311 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 GREB1LQ9C091 1923 aaPredicted RBP7.89□□□□□ -1.15
COL28A1-202ENST00000430711 PVALEFA0A1B0GWK0 134 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 PLSCR1O15162 318 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 CLIC2O15247 247 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 EIF3HO15372 352 aaKnown RBP eCLIP7.89□□□□□ -1.15
COL28A1-202ENST00000430711 ZEB2O60315 1214 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 PLA2G4BP0C869 781 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 IL1R1P14778 569 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 TCP10Q12799 353 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 NAB2Q15742 525 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 KIAA0753Q2KHM9 967 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 MEI1Q5TIA1 1274 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 CCDC181Q5TID7 509 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 ZNF804AQ7Z570 1209 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 IRF2BP2Q7Z5L9 587 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 SFR1Q86XK3 245 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 SIAH1Q8IUQ4 282 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 FAM114A1Q8IWE2 563 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 EHBP1Q8NDI1 1231 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 RUSC1Q9BVN2 902 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 CAPS2Q9BXY5 557 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 DDX47Q9H0S4 455 aaKnown RBP7.89□□□□□ -1.15
COL28A1-202ENST00000430711 SIX2Q9NPC8 291 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.89□□□□□ -1.15
COL28A1-202ENST00000430711 STK17AQ9UEE5 414 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 ATP6V0A2Q9Y487 856 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 ESYT2A0FGR8 921 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 FAM86B1E9PN63 330 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 MPHOSPH10O00566 681 aaKnown RBP7.89□□□□□ -1.15
COL28A1-202ENST00000430711 OPLAHO14841 1288 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 GRIN3BO60391 1043 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 USO1O60763 962 aaKnown RBP7.89□□□□□ -1.15
COL28A1-202ENST00000430711 AKAP3O75969 853 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 IVLP07476 585 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 FAM86B2P0C5J1 330 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 SPATA31C1P0DKV0 1188 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 HOXA13P31271 388 aaPredicted RBP7.89□□□□□ -1.15
COL28A1-202ENST00000430711 SLC12A3P55017 1021 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 KCNH2Q12809 1159 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 NNTQ13423 1086 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 RRP1BQ14684 758 aaKnown RBP7.89□□□□□ -1.15
COL28A1-202ENST00000430711 HERC4Q5GLZ8 1057 aaPredicted RBP7.89□□□□□ -1.15
COL28A1-202ENST00000430711 SFMBT2Q5VUG0 894 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 NAA35Q5VZE5 725 aa7.89□□□□□ -1.15
COL28A1-202ENST00000430711 KRT79Q5XKE5 535 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms