RNA–Protein interactions for RNA: ENST00000428643.1

HMGA1P4-201, Transcript of high mobility group AT-hook 1 pseudogene 4, humanhuman

TSL 2 BASIC

Gene HMGA1P4, Length 334 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P4-201ENST00000428643 RPA1P27694 616 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 TCF7P36402 384 aaPredicted RBP8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 QARSP47897 775 aaKnown RBP8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 CPT1AP50416 773 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 PSMC5P62195 406 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 GRB10Q13322 594 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 CTTNQ14247 550 aaKnown RBP8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 UGCGQ16739 394 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 HSDL1Q3SXM5 330 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 TMEM119Q4V9L6 283 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 PDXDC2PQ6P474 469 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 TRIM50Q86XT4 487 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 CEP57L1Q8IYX8 460 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 IQUBQ8NA54 791 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 SEPT1Q8WYJ6 367 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 GLG1Q92896 1179 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 EMID1Q96A84 441 aaPredicted RBP8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 PNMA5Q96PV4 448 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 GPR20Q99678 358 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 POLR3CQ9BUI4 534 aaPredicted RBP8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 NT5C3AQ9H0P0 336 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 AZI2Q9H6S1 392 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 ZSWIM4Q9H7M6 989 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 SPC25Q9HBM1 224 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 XPNPEP3Q9NQH7 507 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 ZNF302Q9NR11 478 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 DACT1Q9NYF0 836 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 GABBR1Q9UBS5 961 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 STK17AQ9UEE5 414 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 KIAA1024Q9UPX6 916 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 GNEQ9Y223 722 aaKnown RBP8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 TELO2Q9Y4R8 837 aa8.86□□□□□ -0.99
HMGA1P4-201ENST00000428643 MGAMO43451 1857 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 PLXNA1Q9UIW2 1896 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 EMSYQ7Z589 1322 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 SYNRGQ9UMZ2 1314 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 IGSF9BQ9UPX0 1349 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 GSTTP1A0A1W2PQM5 241 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 TRAK2O60296 914 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 DKC1O60832 514 aaKnown RBP eCLIP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 DUSP11O75319 330 aaKnown RBP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 ZNF202O95125 648 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 PGK1P00558 417 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 SSBP05455 408 aaKnown RBP eCLIP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 P4HBP07237 508 aaKnown RBP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 MMP3P08254 477 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 C6orf222P0C671 652 aaPredicted RBP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 SPATA31C1P0DKV0 1188 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 PRKCEQ02156 737 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 FSCN1Q16658 493 aaKnown RBP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 KLHL40Q2TBA0 621 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 SKOR2Q2VWA4 1001 aaPredicted RBP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 SWSAP1Q6NVH7 229 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 CAVIN1Q6NZI2 390 aaKnown RBP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 FBXO46Q6PJ61 603 aaPredicted RBP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 ABHD15Q6UXT9 468 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 TRMT1LQ7Z2T5 733 aaKnown RBP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 CATSPER3Q86XQ3 398 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 CCDC60Q8IWA6 550 aaPredicted RBP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 CKAP2LQ8IYA6 745 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 FMR1NBQ8N0W7 255 aaPredicted RBP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 CNNM3Q8NE01 707 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 SYAP1Q96A49 352 aaPredicted RBP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 CCDC34Q96HJ3 373 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 HSD17B14Q9BPX1 270 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 HMX1Q9NP08 348 aaPredicted RBP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 PRDM10Q9NQV6 1147 aa8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 SEPT9Q9UHD8 586 aaPredicted RBP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 DDX20Q9UHI6 824 aaKnown RBP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 ZNF215Q9UL58 517 aaPredicted RBP8.85□□□□□ -0.99
HMGA1P4-201ENST00000428643 CASP8AP2Q9UKL3 1982 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 A0A087WWV3 80 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 ARHGEF35A5YM69 484 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 ACTN4O43707 911 aaKnown RBP8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 MSCO60682 206 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 SLITRK3O94933 977 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 OATP04181 439 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 LGALS2P05162 132 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 MYL3P08590 195 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 SLFN14P0C7P3 912 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 MARK3P27448 753 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 YWHABP31946 246 aaKnown RBP8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 STAT5BP51692 787 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 CHMP4BP1P59074 171 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 BEX3Q00994 111 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 SNW1Q13573 536 aaKnown RBP8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 DHX8Q14562 1220 aaKnown RBP8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 E2F4Q16254 413 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 PKN2Q16513 984 aaKnown RBP8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 ECM1Q16610 540 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 DGKDQ16760 1214 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 LONRF3Q496Y0 759 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 HYIQ5T013 277 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 PLA2G4FQ68DD2 849 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 KRBA2Q6ZNG9 492 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 KCNK18Q7Z418 384 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 ENGASEQ8NFI3 743 aa8.84□□□□□ -0.99
HMGA1P4-201ENST00000428643 LARP4BQ92615 738 aaKnown RBP8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms