RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 TNFSF4P23510 183 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 GRK2P25098 689 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 PTX3P26022 381 aaPredicted RBP6.06□□□□□ -1.44
VPS13A-207ENST00000419472 TMC3Q7Z5M5 1100 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 RASSF3Q86WH2 238 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 SPATA5Q8NB90 893 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 NPLOC4Q8TAT6 608 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 NAP1L5Q96NT1 182 aaPredicted RBP6.06□□□□□ -1.44
VPS13A-207ENST00000419472 OSBPL5Q9H0X9 879 aaPredicted RBP6.06□□□□□ -1.44
VPS13A-207ENST00000419472 RAD18Q9NS91 495 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 CRIM1Q9NZV1 1036 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 GDF2Q9UK05 429 aaPredicted RBP6.06□□□□□ -1.44
VPS13A-207ENST00000419472 CORO2BQ9UQ03 480 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 KRBA1A5PL33 1030 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 FAM227AF5H4B4 570 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 DVL2O14641 736 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 KDM1AO60341 852 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 TUSC2O75896 110 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 APPP05067 770 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 GRK6P43250 576 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 SMAD3P84022 425 aaKnown RBP6.06□□□□□ -1.44
VPS13A-207ENST00000419472 SMAD2Q15796 467 aaKnown RBP6.06□□□□□ -1.44
VPS13A-207ENST00000419472 UAP1L1Q3KQV9 507 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 RNF214Q8ND24 703 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 DNAJB8Q8NHS0 232 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 LRRC27Q9C0I9 530 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 EDARQ9UNE0 448 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 CCNB3Q8WWL7 1395 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 LRRC9Q6ZRR7 1453 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 ABCA6Q8N139 1617 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 EYA2O00167 538 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 RGS9O75916 674 aaPredicted RBP6.06□□□□□ -1.44
VPS13A-207ENST00000419472 MBD4O95243 580 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 CST3P01034 146 aaPredicted RBP6.06□□□□□ -1.44
VPS13A-207ENST00000419472 HRGP04196 525 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 IFNGR1P15260 489 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 ITGA6P23229 1130 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 ANO4Q32M45 955 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 NPNTQ6UXI9 565 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 SIRT2Q8IXJ6 389 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 TTC30BQ8N4P2 665 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 ISL2Q96A47 359 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 DMRT3Q9NQL9 472 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 KCNK4Q9NYG8 393 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 FRRS1LQ9P0K9 344 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 PGAP2Q9UHJ9 254 aa6.06□□□□□ -1.44
VPS13A-207ENST00000419472 DIS3Q9Y2L1 958 aaKnown RBP6.06□□□□□ -1.44
VPS13A-207ENST00000419472 ARHGEF12Q9NZN5 1544 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 MROH2AA6NES4 1674 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 MAST1Q9Y2H9 1570 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 UBXN7O94888 489 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 FAM193AP78312 1265 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 KIF23Q02241 960 aaPredicted RBP6.05□□□□□ -1.44
VPS13A-207ENST00000419472 IFIT5Q13325 482 aaKnown RBP6.05□□□□□ -1.44
VPS13A-207ENST00000419472 TOR2AQ5JU69 321 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 GPATCH4Q5T3I0 446 aaKnown RBP6.05□□□□□ -1.44
VPS13A-207ENST00000419472 C1QTNF12Q5T7M4 302 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 PDXDC1Q6P996 788 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 TLDC1Q6P9B6 456 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 CDH24Q86UP0 819 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 GCC1Q96CN9 775 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 ALG1Q9BT22 464 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 CERS4Q9HA82 394 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 JPH1Q9HDC5 661 aaPredicted RBP6.05□□□□□ -1.44
VPS13A-207ENST00000419472 ARFGAP3Q9NP61 516 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 GPR27Q9NS67 375 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 TOMM22Q9NS69 142 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 FBXL7Q9UJT9 491 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 AP4E1Q9UPM8 1137 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 LRCH1Q9Y2L9 728 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 FER1L4A9Z1Z3 1794 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 KIDINS220Q9ULH0 1771 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 RTEL1-TNFRSF6BF6WH68 1400 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 B3GALT2O43825 422 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 G3BP1Q13283 466 aaKnown RBP eCLIP6.05□□□□□ -1.44
VPS13A-207ENST00000419472 RGL3Q3MIN7 710 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 LMBR1LQ6UX01 489 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 CDC37L1Q7L3B6 337 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 CCDC155Q8N6L0 562 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 TBC1D20Q96BZ9 403 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 DSCC1Q9BVC3 393 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 TMEM60Q9H2L4 133 aa6.05□□□□□ -1.44
VPS13A-207ENST00000419472 CTDP1Q9Y5B0 961 aaPredicted RBP6.05□□□□□ -1.44
VPS13A-207ENST00000419472 LRRFIP2Q9Y608 721 aaKnown RBP6.05□□□□□ -1.44
VPS13A-207ENST00000419472 NCOA2Q15596 1464 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 MIA2Q96PC5 1412 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 SYCP2Q9BX26 1530 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 NDUFS2O75306 463 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 CD3EP07766 207 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 PDCP20941 246 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 AGXTP21549 392 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 MCCP23508 829 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 RXRGP48443 463 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 ST5P78524 1137 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 PDCD2Q16342 344 aaPredicted RBP6.04□□□□□ -1.44
VPS13A-207ENST00000419472 FAM117BQ6P1L5 589 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 GGT6Q6P531 493 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 TTLL7Q6ZT98 887 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 DENND1CQ8IV53 801 aa6.04□□□□□ -1.44
VPS13A-207ENST00000419472 RCBTB1Q8NDN9 531 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms