RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 CNNM3Q8NE01 707 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 RASSF8Q8NHQ8 419 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 PPTC7Q8NI37 304 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 LRRC15Q8TF66 581 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 COPS5Q92905 334 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 SPATA33Q96N06 139 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 NUP62CLQ9H1M0 184 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 BLOC1S4Q9NUP1 217 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 KBTBD4Q9NVX7 518 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 TMEM63CQ9P1W3 806 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 KIAA1024Q9UPX6 916 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 TELO2Q9Y4R8 837 aa15.96■□□□□ 0.15
SF3B1-204ENST00000414963 POTEFA5A3E0 1075 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 ADCY6O43306 1168 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 DKC1O60832 514 aaKnown RBP eCLIP15.95■□□□□ 0.14
SF3B1-204ENST00000414963 LGR5O75473 907 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 HOXD8P13378 290 aaPredicted RBP15.95■□□□□ 0.14
SF3B1-204ENST00000414963 AKR1A1P14550 325 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 ELNP15502 786 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 CACNB2Q08289 660 aaPredicted RBP15.95■□□□□ 0.14
SF3B1-204ENST00000414963 CTTNQ14247 550 aaKnown RBP15.95■□□□□ 0.14
SF3B1-204ENST00000414963 ZRSR1Q15695 479 aaKnown RBP15.95■□□□□ 0.14
SF3B1-204ENST00000414963 HSDL1Q3SXM5 330 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 CAVIN1Q6NZI2 390 aaKnown RBP15.95■□□□□ 0.14
SF3B1-204ENST00000414963 RBM43Q6ZSC3 357 aaKnown RBP15.95■□□□□ 0.14
SF3B1-204ENST00000414963 KCNK18Q7Z418 384 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 TPH2Q8IWU9 490 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 CEP57L1Q8IYX8 460 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 AFAP1L1Q8TED9 768 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 RAD54LQ92698 747 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 ATP6V0A1Q93050 837 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 PAGE5Q96GU1 130 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 CCDC34Q96HJ3 373 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 NACC1Q96RE7 527 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 LXNQ9BS40 222 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 WRAP73Q9P2S5 460 aaPredicted RBP15.95■□□□□ 0.14
SF3B1-204ENST00000414963 HOOK1Q9UJC3 728 aaKnown RBP15.95■□□□□ 0.14
SF3B1-204ENST00000414963 DNM3Q9UQ16 869 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 TRIM17Q9Y577 477 aa15.95■□□□□ 0.14
SF3B1-204ENST00000414963 MAFBQ9Y5Q3 323 aaPredicted RBP15.95■□□□□ 0.14
SF3B1-204ENST00000414963 NOP56O00567 594 aaKnown RBP15.94■□□□□ 0.14
SF3B1-204ENST00000414963 SEPT4O43236 478 aa15.94■□□□□ 0.14
SF3B1-204ENST00000414963 DUSP11O75319 330 aaKnown RBP15.94■□□□□ 0.14
SF3B1-204ENST00000414963 PPFIA4O75335 1185 aa15.94■□□□□ 0.14
SF3B1-204ENST00000414963 LETM1O95202 739 aaPredicted RBP15.94■□□□□ 0.14
SF3B1-204ENST00000414963 MYL1P05976 194 aa15.94■□□□□ 0.14
SF3B1-204ENST00000414963 NKX3-2P78367 333 aa15.94■□□□□ 0.14
SF3B1-204ENST00000414963 CYP4A11Q02928 519 aa15.94■□□□□ 0.14
SF3B1-204ENST00000414963 SWSAP1Q6NVH7 229 aa15.94■□□□□ 0.14
SF3B1-204ENST00000414963 POTEGQ6S5H5 508 aa15.94■□□□□ 0.14
SF3B1-204ENST00000414963 BANK1Q8NDB2 785 aa15.94■□□□□ 0.14
SF3B1-204ENST00000414963 PCYT2Q99447 389 aa15.94■□□□□ 0.14
SF3B1-204ENST00000414963 PLIN2Q99541 437 aa15.94■□□□□ 0.14
SF3B1-204ENST00000414963 MTRQ99707 1265 aa15.94■□□□□ 0.14
SF3B1-204ENST00000414963 TNMDQ9H2S6 317 aa15.94■□□□□ 0.14
SF3B1-204ENST00000414963 PTPN22Q9Y2R2 807 aa15.94■□□□□ 0.14
SF3B1-204ENST00000414963 A6NJR5 290 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 SORBS3O60504 671 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 STBD1O95210 358 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 EYA4O95677 639 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 HSPA8P11142 646 aaKnown RBP15.93■□□□□ 0.14
SF3B1-204ENST00000414963 TCF7P36402 384 aaPredicted RBP15.93■□□□□ 0.14
SF3B1-204ENST00000414963 PSMC6P62333 389 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 SP4Q02446 784 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 TRIM32Q13049 653 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 UGCGQ16739 394 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 GJC2Q5T442 439 aaPredicted RBP15.93■□□□□ 0.14
SF3B1-204ENST00000414963 CNNM4Q6P4Q7 775 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 SV2BQ7L1I2 683 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 PLPPR4Q7Z2D5 763 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 CCDC60Q8IWA6 550 aaPredicted RBP15.93■□□□□ 0.14
SF3B1-204ENST00000414963 LARP4BQ92615 738 aaKnown RBP15.93■□□□□ 0.14
SF3B1-204ENST00000414963 ZNF302Q9NR11 478 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 ANKEF1Q9NU02 776 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 GABBR1Q9UBS5 961 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 DBR1Q9UK59 544 aaKnown RBP15.93■□□□□ 0.14
SF3B1-204ENST00000414963 CEP350Q5VT06 3117 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 EMSYQ7Z589 1322 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 IGSF9BQ9UPX0 1349 aa15.93■□□□□ 0.14
SF3B1-204ENST00000414963 E9PMD0 336 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 FOXN1O15353 648 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 ZNF862O60290 1169 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 PLA2G4BP0C869 781 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 PRKAR2AP13861 404 aaKnown RBP15.92■□□□□ 0.14
SF3B1-204ENST00000414963 GRK4P32298 578 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 SLC26A2P50443 739 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 SLC12A3P55017 1021 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 AMPD3Q01432 767 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 POSTNQ15063 836 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 CAMK4Q16566 473 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 FAM160B1Q5W0V3 765 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 SYT2Q8N9I0 419 aaPredicted RBP15.92■□□□□ 0.14
SF3B1-204ENST00000414963 OR6J1Q8NGC5 347 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 AFG1LQ8WV93 481 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 ANP32EQ9BTT0 268 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 LRRC27Q9C0I9 530 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 PTCH2Q9Y6C5 1203 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 PCNTO95613 3336 aa15.92■□□□□ 0.14
SF3B1-204ENST00000414963 BACH1O14867 736 aa15.91■□□□□ 0.14
SF3B1-204ENST00000414963 DYNC1LI2O43237 492 aaPredicted RBP15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms