RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 Q9Y3F1 56 aa15.04■□□□□ -0
LIMS1-204ENST00000409441 NFASCO94856 1347 aa15.04■□□□□ -0
LIMS1-204ENST00000409441 SMTNL1A8MU46 457 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 DUSP11O75319 330 aaKnown RBP15.03■□□□□ -0
LIMS1-204ENST00000409441 FARP2O94887 1054 aaPredicted RBP15.03■□□□□ -0
LIMS1-204ENST00000409441 RARBP10826 455 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 PRPHP41219 470 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 TECP42680 631 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 TERF1P54274 439 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 ARHGAP1Q07960 439 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 MTFR1Q15390 333 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 ARL6IP4Q66PJ3 421 aaKnown RBP15.03■□□□□ -0
LIMS1-204ENST00000409441 METTL7BQ6UX53 244 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 LENG1Q96BZ8 264 aaPredicted RBP15.03■□□□□ -0
LIMS1-204ENST00000409441 ARMC5Q96C12 935 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 TEKT3Q9BXF9 490 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 JPH1Q9HDC5 661 aaPredicted RBP15.03■□□□□ -0
LIMS1-204ENST00000409441 DDX20Q9UHI6 824 aaKnown RBP15.03■□□□□ -0
LIMS1-204ENST00000409441 KCNH3Q9ULD8 1083 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 LRRC37A2A6NM11 1700 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 POTEFA5A3E0 1075 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 CCL5P13501 91 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 TPM4P67936 248 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 SP4Q02446 784 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 KRBA2Q6ZNG9 492 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 OR6J1Q8NGC5 347 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 EMID1Q96A84 441 aaPredicted RBP15.03■□□□□ -0
LIMS1-204ENST00000409441 ZNF333Q96JL9 665 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 SPATA33Q96N06 139 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 CLIC6Q96NY7 704 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.03■□□□□ -0
LIMS1-204ENST00000409441 AP5M1Q9H0R1 490 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 RNF208Q9H0X6 261 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 SLC9A2Q9UBY0 812 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 VAV3Q9UKW4 847 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 TELO2Q9Y4R8 837 aa15.03■□□□□ -0
LIMS1-204ENST00000409441 KIAA1217Q5T5P2 1943 aa15.02□□□□□ -0.01
LIMS1-204ENST00000409441 VWA3AA6NCI4 1184 aa15.02□□□□□ -0.01
LIMS1-204ENST00000409441 MSCO60682 206 aa15.02□□□□□ -0.01
LIMS1-204ENST00000409441 CCNE2O96020 404 aa15.02□□□□□ -0.01
LIMS1-204ENST00000409441 HSDL1Q3SXM5 330 aa15.02□□□□□ -0.01
LIMS1-204ENST00000409441 LHX8Q68G74 356 aa15.02□□□□□ -0.01
LIMS1-204ENST00000409441 TLK2Q86UE8 772 aa15.02□□□□□ -0.01
LIMS1-204ENST00000409441 DRC7Q8IY82 874 aa15.02□□□□□ -0.01
LIMS1-204ENST00000409441 AOPEPQ8N6M6 819 aa15.02□□□□□ -0.01
LIMS1-204ENST00000409441 SPC24Q8NBT2 197 aa15.02□□□□□ -0.01
LIMS1-204ENST00000409441 CNNM3Q8NE01 707 aa15.02□□□□□ -0.01
LIMS1-204ENST00000409441 FERMT2Q96AC1 680 aa15.02□□□□□ -0.01
LIMS1-204ENST00000409441 NAP1L5Q96NT1 182 aaPredicted RBP15.02□□□□□ -0.01
LIMS1-204ENST00000409441 UNC45AQ9H3U1 944 aa15.02□□□□□ -0.01
LIMS1-204ENST00000409441 IKBKBO14920 756 aa15.01□□□□□ -0.01
LIMS1-204ENST00000409441 CHMP2AO43633 222 aa15.01□□□□□ -0.01
LIMS1-204ENST00000409441 FXR2P51116 673 aaKnown RBP eCLIP15.01□□□□□ -0.01
LIMS1-204ENST00000409441 ACTR2P61160 394 aa15.01□□□□□ -0.01
LIMS1-204ENST00000409441 KRT76Q01546 638 aa15.01□□□□□ -0.01
LIMS1-204ENST00000409441 PPP2R5CQ13362 524 aa15.01□□□□□ -0.01
LIMS1-204ENST00000409441 PDIA5Q14554 519 aa15.01□□□□□ -0.01
LIMS1-204ENST00000409441 TMEM266Q2M3C6 531 aa15.01□□□□□ -0.01
LIMS1-204ENST00000409441 DPCR1Q3MIW9 517 aa15.01□□□□□ -0.01
LIMS1-204ENST00000409441 ZNF746Q6NUN9 644 aaPredicted RBP15.01□□□□□ -0.01
LIMS1-204ENST00000409441 KANK3Q6NY19 840 aa15.01□□□□□ -0.01
LIMS1-204ENST00000409441 B3GNT9Q6UX72 402 aa15.01□□□□□ -0.01
LIMS1-204ENST00000409441 AFG1LQ8WV93 481 aa15.01□□□□□ -0.01
LIMS1-204ENST00000409441 XPNPEP3Q9NQH7 507 aa15.01□□□□□ -0.01
LIMS1-204ENST00000409441 PAK6Q9NQU5 681 aaPredicted RBP15.01□□□□□ -0.01
LIMS1-204ENST00000409441 TCEAL9Q9UHQ7 104 aa15.01□□□□□ -0.01
LIMS1-204ENST00000409441 NOP56O00567 594 aaKnown RBP15□□□□□ -0.01
LIMS1-204ENST00000409441 PGK1P00558 417 aa15□□□□□ -0.01
LIMS1-204ENST00000409441 GJA9P57773 515 aa15□□□□□ -0.01
LIMS1-204ENST00000409441 IRX5P78411 483 aaPredicted RBP15□□□□□ -0.01
LIMS1-204ENST00000409441 GRIN1Q05586 938 aa15□□□□□ -0.01
LIMS1-204ENST00000409441 SPIRE1Q08AE8 756 aa15□□□□□ -0.01
LIMS1-204ENST00000409441 PPTC7Q8NI37 304 aa15□□□□□ -0.01
LIMS1-204ENST00000409441 SEPT1Q8WYJ6 367 aa15□□□□□ -0.01
LIMS1-204ENST00000409441 ERCC4Q92889 916 aaPredicted RBP15□□□□□ -0.01
LIMS1-204ENST00000409441 CCDC34Q96HJ3 373 aa15□□□□□ -0.01
LIMS1-204ENST00000409441 DEFB118Q96PH6 123 aa15□□□□□ -0.01
LIMS1-204ENST00000409441 GPR20Q99678 358 aa15□□□□□ -0.01
LIMS1-204ENST00000409441 SPC25Q9HBM1 224 aa15□□□□□ -0.01
LIMS1-204ENST00000409441 SPTLC3Q9NUV7 552 aa15□□□□□ -0.01
LIMS1-204ENST00000409441 SAMM50Q9Y512 469 aa15□□□□□ -0.01
LIMS1-204ENST00000409441 HTTP42858 3142 aa15□□□□□ -0.01
LIMS1-204ENST00000409441 GSTTP1A0A1W2PQM5 241 aa14.99□□□□□ -0.01
LIMS1-204ENST00000409441 POTEMA6NI47 508 aa14.99□□□□□ -0.01
LIMS1-204ENST00000409441 A6NJR5 290 aa14.99□□□□□ -0.01
LIMS1-204ENST00000409441 EML1O00423 815 aa14.99□□□□□ -0.01
LIMS1-204ENST00000409441 PPFIA4O75335 1185 aa14.99□□□□□ -0.01
LIMS1-204ENST00000409441 C6orf222P0C671 652 aaPredicted RBP14.99□□□□□ -0.01
LIMS1-204ENST00000409441 SFNP31947 248 aa14.99□□□□□ -0.01
LIMS1-204ENST00000409441 LONRF3Q496Y0 759 aa14.99□□□□□ -0.01
LIMS1-204ENST00000409441 NCAPH2Q6IBW4 605 aa14.99□□□□□ -0.01
LIMS1-204ENST00000409441 MIER3Q7Z3K6 550 aa14.99□□□□□ -0.01
LIMS1-204ENST00000409441 SMAP1Q8IYB5 467 aaPredicted RBP14.99□□□□□ -0.01
LIMS1-204ENST00000409441 IGSF22Q8N9C0 903 aa14.99□□□□□ -0.01
LIMS1-204ENST00000409441 ZNF830Q96NB3 372 aaPredicted RBP14.99□□□□□ -0.01
LIMS1-204ENST00000409441 RAB34Q9BZG1 259 aa14.99□□□□□ -0.01
LIMS1-204ENST00000409441 UPF3AQ9H1J1 476 aaKnown RBP14.99□□□□□ -0.01
LIMS1-204ENST00000409441 KCNF1Q9H3M0 494 aa14.99□□□□□ -0.01
LIMS1-204ENST00000409441 DISC1Q9NRI5 854 aa14.99□□□□□ -0.01
LIMS1-204ENST00000409441 LRWD1Q9UFC0 647 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms