RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 GRB10Q13322 594 aa20.24■□□□□ 0.83
SDC1-203ENST00000403076 SLC9C1Q4G0N8 1177 aa20.24■□□□□ 0.83
SDC1-203ENST00000403076 UTP14CQ5TAP6 766 aaKnown RBP20.24■□□□□ 0.83
SDC1-203ENST00000403076 MAP3K21Q5TCX8 1036 aa20.24■□□□□ 0.83
SDC1-203ENST00000403076 SH3TC2Q8TF17 1288 aa20.24■□□□□ 0.83
SDC1-203ENST00000403076 EMID1Q96A84 441 aaPredicted RBP20.24■□□□□ 0.83
SDC1-203ENST00000403076 DACT1Q9NYF0 836 aa20.24■□□□□ 0.83
SDC1-203ENST00000403076 KIAA1024Q9UPX6 916 aa20.24■□□□□ 0.83
SDC1-203ENST00000403076 A0A087X0B3 334 aa20.23■□□□□ 0.83
SDC1-203ENST00000403076 DUSP11O75319 330 aaKnown RBP20.23■□□□□ 0.83
SDC1-203ENST00000403076 ATG7O95352 703 aa20.23■□□□□ 0.83
SDC1-203ENST00000403076 SPATA31C1P0DKV0 1188 aa20.23■□□□□ 0.83
SDC1-203ENST00000403076 RARBP10826 455 aa20.23■□□□□ 0.83
SDC1-203ENST00000403076 QARSP47897 775 aaKnown RBP20.23■□□□□ 0.83
SDC1-203ENST00000403076 PSMC5P62195 406 aa20.23■□□□□ 0.83
SDC1-203ENST00000403076 FAM160B1Q5W0V3 765 aa20.23■□□□□ 0.83
SDC1-203ENST00000403076 FMR1NBQ8N0W7 255 aaPredicted RBP20.23■□□□□ 0.83
SDC1-203ENST00000403076 ENGASEQ8NFI3 743 aa20.23■□□□□ 0.83
SDC1-203ENST00000403076 ATP6V0A1Q93050 837 aa20.23■□□□□ 0.83
SDC1-203ENST00000403076 PNMA5Q96PV4 448 aa20.23■□□□□ 0.83
SDC1-203ENST00000403076 LXNQ9BS40 222 aa20.23■□□□□ 0.83
SDC1-203ENST00000403076 AZI2Q9H6S1 392 aa20.23■□□□□ 0.83
SDC1-203ENST00000403076 ZSWIM4Q9H7M6 989 aa20.23■□□□□ 0.83
SDC1-203ENST00000403076 HMX1Q9NP08 348 aaPredicted RBP20.23■□□□□ 0.83
SDC1-203ENST00000403076 ZNF302Q9NR11 478 aa20.23■□□□□ 0.83
SDC1-203ENST00000403076 DDX19AQ9NUU7 478 aaKnown RBP20.23■□□□□ 0.83
SDC1-203ENST00000403076 Q9Y3F1 56 aa20.23■□□□□ 0.83
SDC1-203ENST00000403076 POTEFA5A3E0 1075 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 TRAK2O60296 914 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 DKC1O60832 514 aaKnown RBP eCLIP20.22■□□□□ 0.83
SDC1-203ENST00000403076 SNW1Q13573 536 aaKnown RBP20.22■□□□□ 0.83
SDC1-203ENST00000403076 ECM1Q16610 540 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 BRDTQ58F21 947 aaPredicted RBP20.22■□□□□ 0.83
SDC1-203ENST00000403076 POTEGQ6S5H5 508 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 CEP57L1Q8IYX8 460 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 PPTC7Q8NI37 304 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 GLG1Q92896 1179 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 SPC25Q9HBM1 224 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 SERTAD1Q9UHV2 236 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 MUTP22033 750 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 KLHL40Q2TBA0 621 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 TMEM119Q4V9L6 283 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 HYIQ5T013 277 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 PDXDC2PQ6P474 469 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 TRMT1LQ7Z2T5 733 aaKnown RBP20.22■□□□□ 0.83
SDC1-203ENST00000403076 CCDC60Q8IWA6 550 aaPredicted RBP20.22■□□□□ 0.83
SDC1-203ENST00000403076 CNNM3Q8NE01 707 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 USP25Q9UHP3 1055 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 DNM3Q9UQ16 869 aa20.22■□□□□ 0.83
SDC1-203ENST00000403076 CEP350Q5VT06 3117 aa20.21■□□□□ 0.83
SDC1-203ENST00000403076 PCNTO95613 3336 aa20.21■□□□□ 0.83
SDC1-203ENST00000403076 A0A087WWV3 80 aa20.21■□□□□ 0.83
SDC1-203ENST00000403076 STAT5BP51692 787 aa20.21■□□□□ 0.83
SDC1-203ENST00000403076 DHX8Q14562 1220 aaKnown RBP20.21■□□□□ 0.83
SDC1-203ENST00000403076 UGCGQ16739 394 aa20.21■□□□□ 0.83
SDC1-203ENST00000403076 LONRF3Q496Y0 759 aa20.21■□□□□ 0.83
SDC1-203ENST00000403076 FBXO46Q6PJ61 603 aaPredicted RBP20.21■□□□□ 0.83
SDC1-203ENST00000403076 CKAP2LQ8IYA6 745 aa20.21■□□□□ 0.83
SDC1-203ENST00000403076 CCDC34Q96HJ3 373 aa20.21■□□□□ 0.83
SDC1-203ENST00000403076 NACC1Q96RE7 527 aa20.21■□□□□ 0.83
SDC1-203ENST00000403076 STK17AQ9UEE5 414 aa20.21■□□□□ 0.83
SDC1-203ENST00000403076 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.2■□□□□ 0.82
SDC1-203ENST00000403076 E9PMD0 336 aa20.2■□□□□ 0.82
SDC1-203ENST00000403076 PPFIA4O75335 1185 aa20.2■□□□□ 0.82
SDC1-203ENST00000403076 MMP3P08254 477 aa20.2■□□□□ 0.82
SDC1-203ENST00000403076 C6orf222P0C671 652 aaPredicted RBP20.2■□□□□ 0.82
SDC1-203ENST00000403076 CPT1AP50416 773 aa20.2■□□□□ 0.82
SDC1-203ENST00000403076 E2F4Q16254 413 aa20.2■□□□□ 0.82
SDC1-203ENST00000403076 PKN2Q16513 984 aaKnown RBP20.2■□□□□ 0.82
SDC1-203ENST00000403076 DGKDQ16760 1214 aa20.2■□□□□ 0.82
SDC1-203ENST00000403076 KRBA2Q6ZNG9 492 aa20.2■□□□□ 0.82
SDC1-203ENST00000403076 PIGOQ8TEQ8 1089 aa20.2■□□□□ 0.82
SDC1-203ENST00000403076 CUEDC2Q9H467 287 aa20.2■□□□□ 0.82
SDC1-203ENST00000403076 SMARCAD1Q9H4L7 1026 aa20.2■□□□□ 0.82
SDC1-203ENST00000403076 XPNPEP3Q9NQH7 507 aa20.2■□□□□ 0.82
SDC1-203ENST00000403076 DDX20Q9UHI6 824 aaKnown RBP20.2■□□□□ 0.82
SDC1-203ENST00000403076 IGKV6D-21A0A0A0MT36 114 aa20.19■□□□□ 0.82
SDC1-203ENST00000403076 MYCP01106 439 aaPredicted RBP20.19■□□□□ 0.82
SDC1-203ENST00000403076 MYCNP04198 464 aaPredicted RBP20.19■□□□□ 0.82
SDC1-203ENST00000403076 SSBP05455 408 aaKnown RBP eCLIP20.19■□□□□ 0.82
SDC1-203ENST00000403076 SLFN14P0C7P3 912 aa20.19■□□□□ 0.82
SDC1-203ENST00000403076 PSMC6P62333 389 aa20.19■□□□□ 0.82
SDC1-203ENST00000403076 C4orf19Q8IY42 314 aa20.19■□□□□ 0.82
SDC1-203ENST00000403076 KCTD17Q8N5Z5 321 aa20.19■□□□□ 0.82
SDC1-203ENST00000403076 LARP4BQ92615 738 aaKnown RBP20.19■□□□□ 0.82
SDC1-203ENST00000403076 RAD54LQ92698 747 aa20.19■□□□□ 0.82
SDC1-203ENST00000403076 SYAP1Q96A49 352 aaPredicted RBP20.19■□□□□ 0.82
SDC1-203ENST00000403076 CCDC43Q96MW1 224 aaKnown RBP20.19■□□□□ 0.82
SDC1-203ENST00000403076 TIGD1Q96MW7 591 aa20.19■□□□□ 0.82
SDC1-203ENST00000403076 PCYT2Q99447 389 aa20.19■□□□□ 0.82
SDC1-203ENST00000403076 WRAP73Q9P2S5 460 aaPredicted RBP20.19■□□□□ 0.82
SDC1-203ENST00000403076 A6NJR5 290 aa20.18■□□□□ 0.82
SDC1-203ENST00000403076 ACTN4O43707 911 aaKnown RBP20.18■□□□□ 0.82
SDC1-203ENST00000403076 MSCO60682 206 aa20.18■□□□□ 0.82
SDC1-203ENST00000403076 LGR5O75473 907 aa20.18■□□□□ 0.82
SDC1-203ENST00000403076 PGK1P00558 417 aa20.18■□□□□ 0.82
SDC1-203ENST00000403076 LGALS2P05162 132 aa20.18■□□□□ 0.82
SDC1-203ENST00000403076 GJA9P57773 515 aa20.18■□□□□ 0.82
SDC1-203ENST00000403076 BEX3Q00994 111 aa20.18■□□□□ 0.82
SDC1-203ENST00000403076 FSCN1Q16658 493 aaKnown RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms