RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PCDHA10Q9Y5I2 948 aa15.91■□□□□ 0.14
SKA1-202ENST00000398452 ZNF236Q9UL36 1845 aa15.91■□□□□ 0.14
SKA1-202ENST00000398452 BACH1O14867 736 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 NKRFO15226 690 aaKnown RBP eCLIP15.9■□□□□ 0.14
SKA1-202ENST00000398452 ATP9AO75110 1047 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 GGPS1O95749 300 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 SLFN14P0C7P3 912 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 PLCG1P19174 1290 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 MUTP22033 750 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 UBA1P22314 1058 aaKnown RBP15.9■□□□□ 0.14
SKA1-202ENST00000398452 RPA1P27694 616 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 PRMT2P55345 433 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 SNW1Q13573 536 aaKnown RBP15.9■□□□□ 0.14
SKA1-202ENST00000398452 CAMK4Q16566 473 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 IQSEC1Q6DN90 963 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 TPH2Q8IWU9 490 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 USP6NLQ92738 828 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 CCDC47Q96A33 483 aaKnown RBP15.9■□□□□ 0.14
SKA1-202ENST00000398452 ARMC5Q96C12 935 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 OCEL1Q9H607 264 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 SERTAD1Q9UHV2 236 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 DDX41Q9UJV9 622 aaKnown RBP15.9■□□□□ 0.14
SKA1-202ENST00000398452 KIAA1024Q9UPX6 916 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 DNM3Q9UQ16 869 aa15.9■□□□□ 0.14
SKA1-202ENST00000398452 ZNFX1Q9P2E3 1918 aaKnown RBP15.9■□□□□ 0.14
SKA1-202ENST00000398452 DHX15O43143 795 aaKnown RBP15.89■□□□□ 0.13
SKA1-202ENST00000398452 SMC2O95347 1197 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 SNAI1O95863 264 aaPredicted RBP15.89■□□□□ 0.13
SKA1-202ENST00000398452 GH1P01241 217 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 P4HBP07237 508 aaKnown RBP15.89■□□□□ 0.13
SKA1-202ENST00000398452 CTGFP29279 349 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 CYP4A11Q02928 519 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 PRKCZQ05513 592 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 SPIRE1Q08AE8 756 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 SEMA3FQ13275 785 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 LAMC2Q13753 1193 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 LY6KQ17RY6 165 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 FAM160B1Q5W0V3 765 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 METTL7BQ6UX53 244 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 SV2BQ7L1I2 683 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 IFNLR1Q8IU57 520 aaPredicted RBP15.89■□□□□ 0.13
SKA1-202ENST00000398452 SPOCK2Q92563 424 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 ATP6V0A1Q93050 837 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 DYDC2Q96IM9 177 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 ZSWIM4Q9H7M6 989 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 TMEM63CQ9P1W3 806 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 SRRDQ9UH36 339 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 NRBP1Q9UHY1 535 aa15.89■□□□□ 0.13
SKA1-202ENST00000398452 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.88■□□□□ 0.13
SKA1-202ENST00000398452 EML1O00423 815 aa15.88■□□□□ 0.13
SKA1-202ENST00000398452 SORBS3O60504 671 aa15.88■□□□□ 0.13
SKA1-202ENST00000398452 SSBP05455 408 aaKnown RBP eCLIP15.88■□□□□ 0.13
SKA1-202ENST00000398452 QARSP47897 775 aaKnown RBP15.88■□□□□ 0.13
SKA1-202ENST00000398452 LONRF3Q496Y0 759 aa15.88■□□□□ 0.13
SKA1-202ENST00000398452 BRDTQ58F21 947 aaPredicted RBP15.88■□□□□ 0.13
SKA1-202ENST00000398452 PRPF38BQ5VTL8 546 aaKnown RBP15.88■□□□□ 0.13
SKA1-202ENST00000398452 SASS6Q6UVJ0 657 aa15.88■□□□□ 0.13
SKA1-202ENST00000398452 CATSPER3Q86XQ3 398 aa15.88■□□□□ 0.13
SKA1-202ENST00000398452 ELOA2Q8IYF1 753 aaPredicted RBP15.88■□□□□ 0.13
SKA1-202ENST00000398452 LARP4BQ92615 738 aaKnown RBP15.88■□□□□ 0.13
SKA1-202ENST00000398452 ZNF333Q96JL9 665 aa15.88■□□□□ 0.13
SKA1-202ENST00000398452 SPATA33Q96N06 139 aa15.88■□□□□ 0.13
SKA1-202ENST00000398452 NACC1Q96RE7 527 aa15.88■□□□□ 0.13
SKA1-202ENST00000398452 AZI2Q9H6S1 392 aa15.88■□□□□ 0.13
SKA1-202ENST00000398452 FAM184BQ9ULE4 1060 aa15.88■□□□□ 0.13
SKA1-202ENST00000398452 PLXNA1Q9UIW2 1896 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 RBM47A0AV96 593 aaKnown RBP15.87■□□□□ 0.13
SKA1-202ENST00000398452 POTEB3A0JP26 581 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 FARP2O94887 1054 aaPredicted RBP15.87■□□□□ 0.13
SKA1-202ENST00000398452 KRT18P05783 430 aaKnown RBP15.87■□□□□ 0.13
SKA1-202ENST00000398452 MYL1P05976 194 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 CYP2C19P33261 490 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 ADCYAP1R1P41586 468 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 AFMP43652 599 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 ACTR2P61160 394 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 PSMC5P62195 406 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 TNFAIP2Q03169 654 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 GRB10Q13322 594 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 CTTNQ14247 550 aaKnown RBP15.87■□□□□ 0.13
SKA1-202ENST00000398452 POSTNQ15063 836 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 CCL14Q16627 93 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 TMEM119Q4V9L6 283 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 CELF3Q5SZQ8 465 aaKnown RBP15.87■□□□□ 0.13
SKA1-202ENST00000398452 HYIQ5T013 277 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 POTEBQ6S5H4 581 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 BANK1Q8NDB2 785 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 SEPT1Q8WYJ6 367 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 LXNQ9BS40 222 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 MMTAG2Q9BU76 263 aaKnown RBP15.87■□□□□ 0.13
SKA1-202ENST00000398452 PDGFCQ9NRA1 345 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 GABRQQ9UN88 632 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 LCTP09848 1927 aa15.87■□□□□ 0.13
SKA1-202ENST00000398452 ACTN4O43707 911 aaKnown RBP15.86■□□□□ 0.13
SKA1-202ENST00000398452 MED24O75448 989 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 SUPT20HL2P0C7V6 817 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 DHX8Q14562 1220 aaKnown RBP15.86■□□□□ 0.13
SKA1-202ENST00000398452 CCDC144BQ3MJ40 725 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 ZSCAN23Q3MJ62 389 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 DUSP28Q4G0W2 176 aa15.86■□□□□ 0.13
SKA1-202ENST00000398452 TAPT1Q6NXT6 567 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms