RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 CDK8P49336 464 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 KIF23Q02241 960 aaPredicted RBP5.88□□□□□ -1.47
VPS13C-204ENST00000395898 APOL6Q9BWW8 343 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 BRIP1Q9BX63 1249 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 DBNDD1Q9H9R9 158 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 A2ML1A8K2U0 1454 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 CLDN3O15551 220 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 DEUP1Q05D60 604 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 SNCBQ16143 134 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 GPIHBP1Q8IV16 184 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 THEM5Q8N1Q8 247 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 NUDCD1Q96RS6 583 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 UBN1Q9NPG3 1134 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 GNGT2O14610 69 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 CLIC2O15247 247 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 INPP1P49441 399 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 BASP1P80723 227 aaKnown RBP5.88□□□□□ -1.47
VPS13C-204ENST00000395898 PTPN12Q05209 780 aaKnown RBP5.88□□□□□ -1.47
VPS13C-204ENST00000395898 TRIM68Q6AZZ1 485 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 RNF207Q6ZRF8 634 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 DEPDC1BQ8WUY9 529 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 ESRRGP62508 458 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 DYNLL1P63167 89 aaKnown RBP5.88□□□□□ -1.47
VPS13C-204ENST00000395898 NR5A1Q13285 461 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 DALRD3Q5D0E6 543 aaKnown RBP5.88□□□□□ -1.47
VPS13C-204ENST00000395898 NAA35Q5VZE5 725 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 DCAF4Q8WV16 495 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 PUS3Q9BZE2 481 aaKnown RBP5.88□□□□□ -1.47
VPS13C-204ENST00000395898 PDE11AQ9HCR9 933 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 PCDHA13Q9Y5I0 950 aa5.88□□□□□ -1.47
VPS13C-204ENST00000395898 SYNJ2BP-COX16A0A087WUM0 186 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 MTMR1Q13613 665 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 PDIK1LQ8N165 341 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 SIX6OS1Q8N1H7 587 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 TTC13Q8NBP0 860 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 PSPC1Q8WXF1 523 aaKnown RBP5.87□□□□□ -1.47
VPS13C-204ENST00000395898 COX16Q9P0S2 106 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 ENC1O14682 589 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 SMYD4Q8IYR2 804 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-204ENST00000395898 LCORLQ8N3X6 602 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 MASTLQ96GX5 879 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 NLRP4Q96MN2 994 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 TLR7Q9NYK1 1049 aaKnown RBP5.87□□□□□ -1.47
VPS13C-204ENST00000395898 SEL1LQ9UBV2 794 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 STRIP2Q9ULQ0 834 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 KDM6BO15054 1643 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 ZNF189O75820 626 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-204ENST00000395898 PMLP29590 882 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 UNC5CLQ8IV45 518 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 SPDL1Q96EA4 605 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 PGBD1Q96JS3 809 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 TOPORSQ9NS56 1045 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-204ENST00000395898 TXLNGQ9NUQ3 528 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 PPP1R9AQ9ULJ8 1098 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.87□□□□□ -1.47
VPS13C-204ENST00000395898 LRRD1A4D1F6 860 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 WDR64B1ANS9 1081 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 CHEK2O96017 543 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 SRGAP2CP0DJJ0 459 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 PLTPP55058 493 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 GOLGA8FQ08AF8 430 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 GOLGA8DPQ0D2H9 430 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 KCTD16Q68DU8 428 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 PPP1R18Q6NYC8 613 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 PYROXD1Q8WU10 500 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 FAM167AQ96KS9 214 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 FAM20AQ96MK3 541 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 TBC1D22BQ9NU19 505 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 RFX7Q2KHR2 1363 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 MBD5Q9P267 1494 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 EXOC1LA0A1B0GW35 172 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 DR1Q01658 176 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 CAV1Q03135 178 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 PTPROQ16827 1216 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 RESP18Q5W5W9 173 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 TBC1D9BQ66K14 1250 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 OSBP2Q969R2 916 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 PIGSQ96S52 555 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 KLC2Q9H0B6 622 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 FGFR1OP2Q9NVK5 253 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 FBXO40Q9UH90 709 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 SORBS3O60504 671 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 TBXAS1P24557 533 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-204ENST00000395898 TNFAIP2Q03169 654 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 MTERF2Q49AM1 385 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 RASGRP4Q8TDF6 673 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 NXF1Q9UBU9 619 aaKnown RBP5.87□□□□□ -1.47
VPS13C-204ENST00000395898 METP08581 1390 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 CTNND1O60716 968 aaKnown RBP5.87□□□□□ -1.47
VPS13C-204ENST00000395898 DCTN3O75935 186 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 KRT1P04264 644 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 PROSER3Q2NL68 480 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 KRT27Q7Z3Y8 459 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 TTC39CQ8N584 583 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 TTLL6Q8N841 843 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 PLA2R1Q13018 1463 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 MAPK13O15264 365 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 UNC13DQ70J99 1090 aa5.87□□□□□ -1.47
VPS13C-204ENST00000395898 TSPYL2Q9H2G4 693 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-204ENST00000395898 PPME1Q9Y570 386 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms