RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 PDE8BO95263 885 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 ESRRAP11474 423 aaPredicted RBP13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 UBXN2AP68543 259 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 DHX9Q08211 1270 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 ZBTB41Q5SVQ8 909 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 RPAINQ86UA6 219 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 TBCKQ8TEA7 893 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 FMO2Q99518 471 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 MRPL40Q9NQ50 206 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 HACD3Q9P035 362 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 MOCS3O95396 460 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 CUL1Q13616 776 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 FAM133BQ5BKY9 247 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 DSTYKQ6XUX3 929 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 TCP11Q8WWU5 503 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 YEATS2Q9ULM3 1422 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 SNX2O60749 519 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 KLC2Q9H0B6 622 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 DHX36Q9H2U1 1008 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 GPR108Q9NPR9 543 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 SUFUQ9UMX1 484 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 FNDC3AQ9Y2H6 1198 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 PCDHA13Q9Y5I0 950 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 HSPH1Q92598 858 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 ALKBH8Q96BT7 664 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 LRRC37BQ96QE4 947 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 NUP153P49790 1475 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 FRMD3A2A2Y4 597 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 ZBBXA8MT70 800 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 DCTN3O75935 186 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 GOLGA8FQ08AF8 430 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 GOLGA8DPQ0D2H9 430 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 LZICQ8WZA0 190 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 MAN1B1Q9UKM7 699 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 RASGRF2O14827 1237 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 ADCY1Q08828 1119 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 LRRC24Q50LG9 513 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 PDXDC1Q6P996 788 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 ST13P4Q8IZP2 240 aaPredicted RBP13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 CAPN11Q9UMQ6 739 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 ATP7AQ04656 1500 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 NEK9Q8TD19 979 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 ATP10AO60312 1499 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 CFLARO15519 480 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 HSPA4LO95757 839 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 LDHAP00338 332 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 MCF2P10911 925 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 MTERF2Q49AM1 385 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 RWDD4Q6NW29 188 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 NCLNQ969V3 563 aa13.75□□□□□ -0.21
CCDC88C-204ENST00000389857 MXI1P50539 228 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 FAM160B2Q86V87 743 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 CLRN2A0PK11 232 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 ESRRBO95718 433 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 ATXN8OSP0DMR3 200 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 PSMA2P25787 234 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 FSCBQ5H9T9 825 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 PDIK1LQ8N165 341 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 FAF2Q96CS3 445 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 HPCAL4Q9UM19 191 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 DDIT3P35638 169 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 ZMYM1Q5SVZ6 1142 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 EAF2Q96CJ1 260 aaPredicted RBP13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 FAM96AQ9H5X1 160 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 GREM2Q9H772 168 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 L3MBTL1Q9Y468 752 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 ZNF18P17022 549 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 IREB2P48200 963 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 KIAA1755Q5JYT7 1200 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 CC2D2BQ6DHV5 1058 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 GSPT1P15170 499 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 LRRC41Q15345 812 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 LCA5Q86VQ0 697 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 TDRD7Q8NHU6 1098 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 SLAIN2Q9P270 581 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 MMP1P03956 469 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 CD58P19256 250 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 MSTO1Q9BUK6 570 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 EMILIN3Q9NT22 766 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 TRIM33Q9UPN9 1127 aa13.74□□□□□ -0.21
CCDC88C-204ENST00000389857 COBLO75128 1261 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 ERICH1Q86X53 443 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 SCG3Q8WXD2 468 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 USP44Q9H0E7 712 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 PNMA3Q9UL41 463 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 FAM95CA0A1B0GW59 222 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 EFCAB14O75071 495 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 PLA2G4BP0C869 781 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 LRRC63Q05C16 580 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 GIMAP8Q8ND71 665 aaPredicted RBP13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 IFT43Q96FT9 208 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 HINFPQ9BQA5 517 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 INSRP06213 1382 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 DTNBO60941 627 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 GNAT1P11488 350 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 PHKA1P46020 1223 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 RECQLP46063 649 aaPredicted RBP13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 NNTQ13423 1086 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 RHOT2Q8IXI1 618 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms