RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 KRT9P35527 623 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 C8orf74Q6P047 294 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 NEK10Q6ZWH5 1172 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 SPATA24Q86W54 205 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 BPHLQ86WA6 291 aaPredicted RBP10.16□□□□□ -0.78
PTPRA-204ENST00000380393 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.16□□□□□ -0.783e-6■■■■■ 69.6
PTPRA-204ENST00000380393 RBBP8NLQ8NC74 664 aaPredicted RBP10.16□□□□□ -0.78
PTPRA-204ENST00000380393 NUDCD1Q96RS6 583 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 PLCB1Q9NQ66 1216 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 GPHNQ9NQX3 736 aaPredicted RBP10.16□□□□□ -0.78
PTPRA-204ENST00000380393 BTBD7Q9P203 1132 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 TUBGCP6Q96RT7 1819 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 PTPDC1A2A3K4 754 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 IQCA1LA6NCM1 817 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 SMIM23A6NLE4 172 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 TRIM64CA6NLI5 447 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 ASMTLO95671 621 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 CYP1A1P04798 512 aaPredicted RBP10.16□□□□□ -0.78
PTPRA-204ENST00000380393 MARCKSP29966 332 aaPredicted RBP10.16□□□□□ -0.78
PTPRA-204ENST00000380393 COPS2P61201 443 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 ERVK-24P63145 666 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 ITIH3Q06033 890 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 PNOCQ13519 176 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 SAFBQ15424 915 aaKnown RBP eCLIP10.16□□□□□ -0.78
PTPRA-204ENST00000380393 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.16□□□□□ -0.78
PTPRA-204ENST00000380393 TRMT44Q8IYL2 757 aaKnown RBP10.16□□□□□ -0.78
PTPRA-204ENST00000380393 CACTIN-AS1Q8N1I8 211 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 ASAP3Q8TDY4 903 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 MAELQ96JY0 434 aaKnown RBP10.16□□□□□ -0.78
PTPRA-204ENST00000380393 COL5A2P05997 1499 aaPredicted RBP10.16□□□□□ -0.78
PTPRA-204ENST00000380393 PHLPP1O60346 1717 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 USP54Q70EL1 1684 aa10.16□□□□□ -0.78
PTPRA-204ENST00000380393 UBTFL6P0CB48 400 aaPredicted RBP10.15□□□□□ -0.78
PTPRA-204ENST00000380393 PLCG2P16885 1265 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 S100A1P23297 94 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 CARSP49589 748 aaKnown RBP10.15□□□□□ -0.78
PTPRA-204ENST00000380393 CCDC152Q4G0S7 254 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 TMEM214Q6NUQ4 689 aaKnown RBP10.15□□□□□ -0.78
PTPRA-204ENST00000380393 IFT20Q8IY31 132 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 NELFBQ8WX92 580 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 DNAJC1Q96KC8 554 aaKnown RBP10.15□□□□□ -0.78
PTPRA-204ENST00000380393 DDX50Q9BQ39 737 aaKnown RBP10.15□□□□□ -0.78
PTPRA-204ENST00000380393 HAUS4Q9H6D7 363 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 ARHGEF3Q9NR81 526 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 TLR7Q9NYK1 1049 aaKnown RBP10.15□□□□□ -0.78
PTPRA-204ENST00000380393 TUBE1Q9UJT0 475 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 TRIM33Q9UPN9 1127 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 COL18A1P39060 1754 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 WDR46O15213 610 aaKnown RBP10.15□□□□□ -0.78
PTPRA-204ENST00000380393 PDE5AO76074 875 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 LCA5LO95447 670 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 ZCCHC18P0CG32 403 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 PIP4K2AP48426 406 aaPredicted RBP10.15□□□□□ -0.78
PTPRA-204ENST00000380393 NR1I3Q14994 352 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 LIN52Q52LA3 116 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 NEPROQ6NW34 567 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 TRIM67Q6ZTA4 783 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 FAM47EQ6ZV65 393 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 UBE2Q1Q7Z7E8 422 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 RSPH3Q86UC2 560 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 C11orf74Q86VG3 221 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 KRI1Q8N9T8 703 aaKnown RBP10.15□□□□□ -0.78
PTPRA-204ENST00000380393 TUBGCP5Q96RT8 1024 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 HNRNPABQ99729 332 aaKnown RBP10.15□□□□□ -0.78
PTPRA-204ENST00000380393 NOVA2Q9UNW9 492 aaKnown RBP10.15□□□□□ -0.78
PTPRA-204ENST00000380393 CRB1P82279 1406 aa10.15□□□□□ -0.78
PTPRA-204ENST00000380393 ESYT3A0FGR9 886 aa10.15□□□□□ -0.79
PTPRA-204ENST00000380393 TBC1D12O60347 775 aa10.15□□□□□ -0.79
PTPRA-204ENST00000380393 PEX11AO75192 247 aa10.15□□□□□ -0.79
PTPRA-204ENST00000380393 PFKFB1P16118 471 aa10.15□□□□□ -0.79
PTPRA-204ENST00000380393 TMED10P49755 219 aaKnown RBP10.15□□□□□ -0.79
PTPRA-204ENST00000380393 CDK17Q00537 523 aa10.15□□□□□ -0.79
PTPRA-204ENST00000380393 SPATA4Q8NEY3 305 aa10.15□□□□□ -0.79
PTPRA-204ENST00000380393 RBM46Q8TBY0 533 aaKnown RBP10.15□□□□□ -0.79
PTPRA-204ENST00000380393 FERMT2Q96AC1 680 aa10.15□□□□□ -0.79
PTPRA-204ENST00000380393 MRPL46Q9H2W6 279 aaKnown RBP10.15□□□□□ -0.79
PTPRA-204ENST00000380393 TPK1Q9H3S4 243 aa10.15□□□□□ -0.79
PTPRA-204ENST00000380393 CYP39A1Q9NYL5 469 aa10.15□□□□□ -0.79
PTPRA-204ENST00000380393 LARSQ9P2J5 1176 aaKnown RBP10.15□□□□□ -0.79
PTPRA-204ENST00000380393 FADS3Q9Y5Q0 445 aa10.15□□□□□ -0.79
PTPRA-204ENST00000380393 ZMYM6O95789 1325 aa10.15□□□□□ -0.79
PTPRA-204ENST00000380393 RNMTO43148 476 aaKnown RBP10.14□□□□□ -0.79
PTPRA-204ENST00000380393 OXSR1O95747 527 aaPredicted RBP10.14□□□□□ -0.79
PTPRA-204ENST00000380393 ALDH2P05091 517 aa10.14□□□□□ -0.79
PTPRA-204ENST00000380393 AIMP1Q12904 312 aaKnown RBP10.14□□□□□ -0.79
PTPRA-204ENST00000380393 HAUS3Q68CZ6 603 aa10.14□□□□□ -0.79
PTPRA-204ENST00000380393 MYO1HQ8N1T3 1032 aa10.14□□□□□ -0.79
PTPRA-204ENST00000380393 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.14□□□□□ -0.79
PTPRA-204ENST00000380393 PPFIBP2Q8ND30 876 aa10.14□□□□□ -0.79
PTPRA-204ENST00000380393 OR2W6PQ8NHA6 318 aa10.14□□□□□ -0.79
PTPRA-204ENST00000380393 KRT23Q9C075 422 aa10.14□□□□□ -0.79
PTPRA-204ENST00000380393 NMRK1Q9NWW6 199 aa10.14□□□□□ -0.79
PTPRA-204ENST00000380393 CHPF2Q9P2E5 772 aa10.14□□□□□ -0.79
PTPRA-204ENST00000380393 TFR2Q9UP52 801 aa10.14□□□□□ -0.79
PTPRA-204ENST00000380393 TTLL3Q9Y4R7 772 aa10.14□□□□□ -0.79
PTPRA-204ENST00000380393 A6NJR5 290 aa10.14□□□□□ -0.79
PTPRA-204ENST00000380393 VAV1P15498 845 aa10.14□□□□□ -0.79
PTPRA-204ENST00000380393 BDNFP23560 247 aa10.14□□□□□ -0.79
PTPRA-204ENST00000380393 FXR1P51114 621 aaKnown RBP eCLIP10.14□□□□□ -0.79
PTPRA-204ENST00000380393 CCR3P51677 355 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms