RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 SNTG2Q9NY99 539 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 SRPK3Q9UPE1 567 aa3.47□□□□□ -1.85
VPS13A-206ENST00000376646 MRPS23Q9Y3D9 190 aaKnown RBP3.47□□□□□ -1.85
VPS13A-206ENST00000376646 RASGRP1O95267 797 aa3.46□□□□□ -1.85
VPS13A-206ENST00000376646 MC4RP32245 332 aa3.46□□□□□ -1.85
VPS13A-206ENST00000376646 SUMO1P63165 101 aaKnown RBP3.46□□□□□ -1.85
VPS13A-206ENST00000376646 TM4SF20Q53R12 229 aa3.46□□□□□ -1.85
VPS13A-206ENST00000376646 CPZQ66K79 652 aa3.46□□□□□ -1.85
VPS13A-206ENST00000376646 ZNF585AQ6P3V2 769 aa3.46□□□□□ -1.85
VPS13A-206ENST00000376646 KLHL36Q8N4N3 616 aa3.46□□□□□ -1.85
VPS13A-206ENST00000376646 PMFBP1Q8TBY8 1022 aa3.46□□□□□ -1.85
VPS13A-206ENST00000376646 DNAJC7Q99615 494 aa3.46□□□□□ -1.85
VPS13A-206ENST00000376646 MEGF9Q9H1U4 602 aa3.46□□□□□ -1.85
VPS13A-206ENST00000376646 SLC52A2Q9HAB3 445 aa3.46□□□□□ -1.85
VPS13A-206ENST00000376646 BARX1Q9HBU1 254 aaPredicted RBP3.46□□□□□ -1.85
VPS13A-206ENST00000376646 NDOR1Q9UHB4 597 aa3.46□□□□□ -1.85
VPS13A-206ENST00000376646 COQ6Q9Y2Z9 468 aa3.46□□□□□ -1.85
VPS13A-206ENST00000376646 CCDC66A2RUB6 948 aa3.46□□□□□ -1.86
VPS13A-206ENST00000376646 NPEPPSL1A6NEC2 478 aa3.46□□□□□ -1.86
VPS13A-206ENST00000376646 AQP7O14520 342 aa3.46□□□□□ -1.86
VPS13A-206ENST00000376646 ENO2P09104 434 aaPredicted RBP3.46□□□□□ -1.86
VPS13A-206ENST00000376646 RANGAP1P46060 587 aaPredicted RBP3.46□□□□□ -1.86
VPS13A-206ENST00000376646 PPP2CBP62714 309 aa3.46□□□□□ -1.86
VPS13A-206ENST00000376646 PPP2CAP67775 309 aa3.46□□□□□ -1.86
VPS13A-206ENST00000376646 DBPQ10586 325 aaPredicted RBP3.46□□□□□ -1.86
VPS13A-206ENST00000376646 NOLC1Q14978 699 aaKnown RBP eCLIP3.46□□□□□ -1.86
VPS13A-206ENST00000376646 ARHGEF18Q6ZSZ5 1173 aa3.46□□□□□ -1.86
VPS13A-206ENST00000376646 MAMDC2Q7Z304 686 aaPredicted RBP3.46□□□□□ -1.86
VPS13A-206ENST00000376646 PALM2Q8IXS6 379 aa3.46□□□□□ -1.86
VPS13A-206ENST00000376646 CHST13Q8NET6 341 aa3.46□□□□□ -1.86
VPS13A-206ENST00000376646 FBXW5Q969U6 566 aa3.46□□□□□ -1.86
VPS13A-206ENST00000376646 ZNF669Q96BR6 464 aaPredicted RBP3.46□□□□□ -1.86
VPS13A-206ENST00000376646 DHRS4Q9BTZ2 278 aa3.46□□□□□ -1.86
VPS13A-206ENST00000376646 SMURF1Q9HCE7 757 aa3.46□□□□□ -1.86
VPS13A-206ENST00000376646 SIRPGQ9P1W8 387 aa3.46□□□□□ -1.86
VPS13A-206ENST00000376646 ADAM29Q9UKF5 820 aa3.46□□□□□ -1.86
VPS13A-206ENST00000376646 ESYT3A0FGR9 886 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 ARVCFO00192 962 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 CYP7B1O75881 506 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 CNOT4O95628 575 aaKnown RBP3.45□□□□□ -1.86
VPS13A-206ENST00000376646 RRADP55042 308 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 CDSNQ15517 529 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 Q6ZUG5 572 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 SPRED1Q7Z699 444 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 ZC3H7AQ8IWR0 971 aaKnown RBP3.45□□□□□ -1.86
VPS13A-206ENST00000376646 SLC7A14Q8TBB6 771 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 WWC2-AS2Q96NR7 200 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 SAMD11Q96NU1 681 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 IPO9Q96P70 1041 aaKnown RBP3.45□□□□□ -1.86
VPS13A-206ENST00000376646 LRRC37BQ96QE4 947 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 WRNIP1Q96S55 665 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 CNOT11Q9UKZ1 510 aaKnown RBP3.45□□□□□ -1.86
VPS13A-206ENST00000376646 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.45□□□□□ -1.86
VPS13A-206ENST00000376646 PRAMEF25A6NGN4 478 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 ZNF561-AS1K7EIQ3 104 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 CSF2RBP32927 897 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 ADCY8P40145 1251 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 ST5P78524 1137 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 GPR19Q15760 415 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 RALYLQ86SE5 291 aaKnown RBP3.45□□□□□ -1.86
VPS13A-206ENST00000376646 KISS1RQ969F8 398 aaPredicted RBP3.45□□□□□ -1.86
VPS13A-206ENST00000376646 SRPK1Q96SB4 655 aaKnown RBP3.45□□□□□ -1.86
VPS13A-206ENST00000376646 ATP23Q9Y6H3 246 aa3.45□□□□□ -1.86
VPS13A-206ENST00000376646 WNT9AO14904 365 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 MATN3O15232 486 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 TNFRSF1AP19438 455 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 EPHB4P54760 987 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 GABREP78334 506 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 NBPF6Q5VWK0 638 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 LRSAM1Q6UWE0 723 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 CIR1Q86X95 450 aaPredicted RBP3.44□□□□□ -1.86
VPS13A-206ENST00000376646 SCLYQ96I15 445 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 NBPF4Q96M43 638 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 DNAJC2Q99543 621 aaKnown RBP3.44□□□□□ -1.86
VPS13A-206ENST00000376646 PDGFDQ9GZP0 370 aaPredicted RBP3.44□□□□□ -1.86
VPS13A-206ENST00000376646 CD248Q9HCU0 757 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 ARHGAP28Q9P2N2 729 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 NUB1Q9Y5A7 615 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 H0Y858 1186 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 SCDO00767 359 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 C4BPAP04003 597 aaKnown RBP3.44□□□□□ -1.86
VPS13A-206ENST00000376646 IL13RA1P78552 427 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 KRTAP5-11Q6L8G4 156 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 ABHD17CQ6PCB6 329 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 C16orf59Q7L2K0 433 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 DPH6Q7L8W6 267 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 FGD2Q7Z6J4 655 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 PLEKHH3Q7Z736 793 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 SH3RF3Q8TEJ3 882 aaPredicted RBP3.44□□□□□ -1.86
VPS13A-206ENST00000376646 HIRIP3Q9BW71 556 aaPredicted RBP3.44□□□□□ -1.86
VPS13A-206ENST00000376646 UCKL1Q9NWZ5 548 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 CDC42EP3Q9UKI2 254 aa3.44□□□□□ -1.86
VPS13A-206ENST00000376646 FOXS1O43638 330 aa3.43□□□□□ -1.86
VPS13A-206ENST00000376646 MMEP08473 750 aa3.43□□□□□ -1.86
VPS13A-206ENST00000376646 RBL2Q08999 1139 aa3.43□□□□□ -1.86
VPS13A-206ENST00000376646 SURF1Q15526 300 aa3.43□□□□□ -1.86
VPS13A-206ENST00000376646 CRY1Q16526 586 aa3.43□□□□□ -1.86
VPS13A-206ENST00000376646 FIGNQ5HY92 759 aa3.43□□□□□ -1.86
VPS13A-206ENST00000376646 DNERQ8NFT8 737 aa3.43□□□□□ -1.86
VPS13A-206ENST00000376646 DVL3Q92997 716 aaPredicted RBP3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms