RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 RUFY4Q6ZNE9 571 aa24.71■■□□□ 1.55
CCDC28B-201ENST00000373602 PLPPR4Q7Z2D5 763 aa24.71■■□□□ 1.55
CCDC28B-201ENST00000373602 CCDC148Q8NFR7 591 aa24.71■■□□□ 1.55
CCDC28B-201ENST00000373602 BICD2Q8TD16 824 aa24.71■■□□□ 1.55
CCDC28B-201ENST00000373602 SEPT8Q92599 483 aa24.71■■□□□ 1.55
CCDC28B-201ENST00000373602 ZBED2Q9BTP6 218 aa24.71■■□□□ 1.55
CCDC28B-201ENST00000373602 TUBE1Q9UJT0 475 aa24.71■■□□□ 1.55
CCDC28B-201ENST00000373602 CHD9Q3L8U1 2897 aa24.7■■□□□ 1.54
CCDC28B-201ENST00000373602 LIN28BQ6ZN17 250 aaKnown RBP eCLIP24.7■■□□□ 1.54
CCDC28B-201ENST00000373602 CERS4Q9HA82 394 aa24.7■■□□□ 1.54
CCDC28B-201ENST00000373602 VPS54Q9P1Q0 977 aa24.7■■□□□ 1.54
CCDC28B-201ENST00000373602 RRN3P2A6NIE6 340 aa24.69■■□□□ 1.54
CCDC28B-201ENST00000373602 DHX15O43143 795 aaKnown RBP24.69■■□□□ 1.54
CCDC28B-201ENST00000373602 CCNE2O96020 404 aa24.69■■□□□ 1.54
CCDC28B-201ENST00000373602 INSRRP14616 1297 aa24.69■■□□□ 1.54
CCDC28B-201ENST00000373602 STAT5BP51692 787 aa24.69■■□□□ 1.54
CCDC28B-201ENST00000373602 RASGRP4Q8TDF6 673 aa24.69■■□□□ 1.54
CCDC28B-201ENST00000373602 TNPO1Q92973 898 aaKnown RBP24.69■■□□□ 1.54
CCDC28B-201ENST00000373602 RAD9AQ99638 391 aa24.69■■□□□ 1.54
CCDC28B-201ENST00000373602 SH3GLB2Q9NR46 395 aa24.69■■□□□ 1.54
CCDC28B-201ENST00000373602 PDRG1Q9NUG6 133 aa24.69■■□□□ 1.54
CCDC28B-201ENST00000373602 IGKV6D-21A0A0A0MT36 114 aa24.68■■□□□ 1.54
CCDC28B-201ENST00000373602 LCHNA4D1U4 455 aa24.68■■□□□ 1.54
CCDC28B-201ENST00000373602 EPOPA6NHQ4 379 aa24.68■■□□□ 1.54
CCDC28B-201ENST00000373602 CHRNA1P02708 482 aa24.68■■□□□ 1.54
CCDC28B-201ENST00000373602 SSRP1Q08945 709 aaKnown RBP24.68■■□□□ 1.54
CCDC28B-201ENST00000373602 PLCB4Q15147 1175 aa24.68■■□□□ 1.54
CCDC28B-201ENST00000373602 RSPH3Q86UC2 560 aa24.68■■□□□ 1.54
CCDC28B-201ENST00000373602 TRIM22Q8IYM9 498 aa24.68■■□□□ 1.54
CCDC28B-201ENST00000373602 PPM1EQ8WY54 764 aa24.68■■□□□ 1.54
CCDC28B-201ENST00000373602 LARP6Q9BRS8 491 aaKnown RBP24.68■■□□□ 1.54
CCDC28B-201ENST00000373602 MICAL3Q7RTP6 2002 aa24.68■■□□□ 1.54
CCDC28B-201ENST00000373602 DDX39AO00148 427 aaKnown RBP24.67■■□□□ 1.54
CCDC28B-201ENST00000373602 RFXAPO00287 272 aa24.67■■□□□ 1.54
CCDC28B-201ENST00000373602 IPO5O00410 1097 aaKnown RBP24.67■■□□□ 1.54
CCDC28B-201ENST00000373602 AMHP03971 560 aa24.67■■□□□ 1.54
CCDC28B-201ENST00000373602 POU3F3P20264 500 aaPredicted RBP24.67■■□□□ 1.54
CCDC28B-201ENST00000373602 CIITAP33076 1130 aa24.67■■□□□ 1.54
CCDC28B-201ENST00000373602 IGBP1P78318 339 aa24.67■■□□□ 1.54
CCDC28B-201ENST00000373602 SETQ01105 290 aaPredicted RBP24.67■■□□□ 1.54
CCDC28B-201ENST00000373602 MGAT3Q09327 533 aa24.67■■□□□ 1.54
CCDC28B-201ENST00000373602 ABHD15Q6UXT9 468 aa24.67■■□□□ 1.54
CCDC28B-201ENST00000373602 DNAJB3Q8WWF6 145 aa24.67■■□□□ 1.54
CCDC28B-201ENST00000373602 ARNTL2Q8WYA1 636 aa24.67■■□□□ 1.54
CCDC28B-201ENST00000373602 APBB2Q92870 758 aa24.67■■□□□ 1.54
CCDC28B-201ENST00000373602 COL25A1Q9BXS0 654 aaPredicted RBP24.67■■□□□ 1.54
CCDC28B-201ENST00000373602 TRPC6Q9Y210 931 aa24.67■■□□□ 1.54
CCDC28B-201ENST00000373602 CPLX1O14810 134 aa24.66■■□□□ 1.54
CCDC28B-201ENST00000373602 RPLP2P05387 115 aaKnown RBP24.66■■□□□ 1.54
CCDC28B-201ENST00000373602 SLC26A2P50443 739 aa24.66■■□□□ 1.54
CCDC28B-201ENST00000373602 FAM117BQ6P1L5 589 aa24.66■■□□□ 1.54
CCDC28B-201ENST00000373602 MYOCDQ8IZQ8 938 aa24.66■■□□□ 1.54
CCDC28B-201ENST00000373602 TBC1D22BQ9NU19 505 aa24.66■■□□□ 1.54
CCDC28B-201ENST00000373602 CCDC85BQ15834 202 aaPredicted RBP24.65■■□□□ 1.54
CCDC28B-201ENST00000373602 SPRED2Q7Z698 418 aa24.65■■□□□ 1.54
CCDC28B-201ENST00000373602 ZNF577Q9BSK1 485 aa24.65■■□□□ 1.54
CCDC28B-201ENST00000373602 IFIH1Q9BYX4 1025 aaKnown RBP24.65■■□□□ 1.54
CCDC28B-201ENST00000373602 PRDM6Q9NQX0 595 aa24.65■■□□□ 1.54
CCDC28B-201ENST00000373602 EYSQ5T1H1 3165 aa24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 LOC101059915A0A1B0GWI6 518 aaPredicted RBP24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 POTEB3A0JP26 581 aa24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 EDIL3O43854 480 aa24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 DEXIO95424 95 aa24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 NLRP5P59047 1200 aa24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 STK3Q13188 491 aa24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 PRR16Q569H4 304 aa24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 FAM160B1Q5W0V3 765 aa24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 CPLX2Q6PUV4 134 aaKnown RBP24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 POTEBQ6S5H4 581 aa24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 CCDC60Q8IWA6 550 aaPredicted RBP24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 ZBTB10Q96DT7 871 aa24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 UIMC1Q96RL1 719 aa24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 INSL6Q9Y581 213 aa24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 PCDHA2Q9Y5H9 948 aa24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 MTCH2Q9Y6C9 303 aa24.64■■□□□ 1.54
CCDC28B-201ENST00000373602 LINC01553A4QN01 128 aa24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 BACH1O14867 736 aa24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 GHRP10912 638 aa24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 USP11P51784 963 aa24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 ANAPC15P60006 121 aa24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 HTRA4P83105 476 aaPredicted RBP24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 LPIN1Q14693 890 aa24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 ZNF746Q6NUN9 644 aaPredicted RBP24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 MIS18BP1Q6P0N0 1132 aa24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 TRAPPC12Q8WVT3 735 aa24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 TOP1MTQ969P6 601 aa24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 LENG9Q96B70 501 aa24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 FAM49AQ9H0Q0 323 aaPredicted RBP24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 ZNF302Q9NR11 478 aa24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 PCDHA4Q9UN74 947 aa24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 CDY2AQ9Y6F7 541 aa24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 CHD7Q9P2D1 2997 aa24.63■■□□□ 1.53
CCDC28B-201ENST00000373602 GTPBP6O43824 516 aaPredicted RBP24.62■■□□□ 1.53
CCDC28B-201ENST00000373602 HBP1O60381 514 aa24.62■■□□□ 1.53
CCDC28B-201ENST00000373602 ERVK-21P61565 698 aa24.62■■□□□ 1.53
CCDC28B-201ENST00000373602 MRPS6P82932 125 aaKnown RBP24.62■■□□□ 1.53
CCDC28B-201ENST00000373602 FBXO47Q5MNV8 452 aa24.62■■□□□ 1.53
CCDC28B-201ENST00000373602 FAM177A1Q8N128 213 aaPredicted RBP24.62■■□□□ 1.53
CCDC28B-201ENST00000373602 ATP8B4Q8TF62 1192 aa24.62■■□□□ 1.53
CCDC28B-201ENST00000373602 SIP14410 1827 aa24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms