RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 ZNF541Q9H0D2 1346 aa4.18□□□□□ -1.74
MCF2-202ENST00000370573 SBF1O95248 1867 aa4.18□□□□□ -1.74
MCF2-202ENST00000370573 ESYT3A0FGR9 886 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 E7EWF7 191 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 FBXO24O75426 580 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 BAG3O95817 575 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 LMNB1P20700 586 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 SSTR4P31391 388 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 EIF4A3P38919 411 aaKnown RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 ANP32AP39687 249 aaKnown RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 NEK4P51957 841 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 FCGRTP55899 365 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 EXOSC6Q5RKV6 272 aaKnown RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 TBC1D10CQ8IV04 446 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 TEX11Q8IYF3 940 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 AGBL3Q8NEM8 1001 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 TGFBRAP1Q8WUH2 860 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 SNX21Q969T3 373 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 TEKT1Q969V4 418 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 PRMT6Q96LA8 375 aaPredicted RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 ZDHHC15Q96MV8 337 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 TTC14Q96N46 770 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 DNAJC7Q99615 494 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 RSRP1Q9BUV0 290 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 TM6SF1Q9BZW5 370 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 NAPBQ9H115 298 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 DDX4Q9NQI0 724 aaKnown RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 USP40Q9NVE5 1235 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 UBP1Q9NZI7 540 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 TLR6Q9Y2C9 796 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 ZMYM6O95789 1325 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 RPAP1Q9BWH6 1393 aaPredicted RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 BAZ2AQ9UIF9 1905 aaKnown RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 TMEM238LA0A1B0GVL6 79 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 ZNF213O14771 459 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 TPD52L2O43399 206 aaKnown RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 WDHD1O75717 1129 aaPredicted RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 TGFB1P01137 390 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 ZKSCAN1P17029 563 aaPredicted RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 CASTP20810 708 aaKnown RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 TDO2P48775 406 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 GMPSP49915 693 aaPredicted RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 EXOSC10Q01780 885 aaKnown RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 FAM160A1Q05DH4 1040 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 FAAP100Q0VG06 881 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 NFIAQ12857 509 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 TNIP1Q15025 636 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 POU4F3Q15319 338 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 IMMTQ16891 758 aaKnown RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 CFAP100Q494V2 611 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 CCDC81Q6ZN84 652 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 MAPKAPK5Q8IW41 473 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 ZFPM1Q8IX07 1006 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 ANAPC16Q96DE5 110 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 ZBED3Q96IU2 234 aaPredicted RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 TCEANC2Q96MN5 208 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 IPO9Q96P70 1041 aaKnown RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 NEK1Q96PY6 1258 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 NOL10Q9BSC4 688 aaKnown RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 NOC4LQ9BVI4 516 aaKnown RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 NACAP1Q9BZK3 213 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 NRSN2Q9GZP1 204 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 SOX17Q9H6I2 414 aaPredicted RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 CYP4F12Q9HCS2 524 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 ZFP64Q9NPA5 681 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 ATP8A2Q9NTI2 1148 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 SAP30BPQ9UHR5 308 aaKnown RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 ANAPC4Q9UJX5 808 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 CDK5RAP2Q96SN8 1893 aa4.17□□□□□ -1.74
MCF2-202ENST00000370573 DICER1Q9UPY3 1922 aaKnown RBP4.17□□□□□ -1.74
MCF2-202ENST00000370573 MYO3BQ8WXR4 1341 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 HYAL3O43820 417 aaPredicted RBP4.16□□□□□ -1.74
MCF2-202ENST00000370573 IGLV1-40P01703 118 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 CYP11A1P05108 521 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 GARTP22102 1010 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 RPS6KB1P23443 525 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 GBP2P32456 591 aaPredicted RBP4.16□□□□□ -1.74
MCF2-202ENST00000370573 PLCD1P51178 756 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 RBM5P52756 815 aaKnown RBP eCLIP4.16□□□□□ -1.74
MCF2-202ENST00000370573 CACNB3P54284 484 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 GYS2P54840 703 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 EIF6P56537 245 aaKnown RBP4.16□□□□□ -1.74
MCF2-202ENST00000370573 CHMP4BP1P59074 171 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 ZNF280AP59817 542 aaPredicted RBP4.16□□□□□ -1.74
MCF2-202ENST00000370573 PPARAQ07869 468 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 KRT32Q14532 448 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 GPR162Q16538 588 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 SLC4A8Q2Y0W8 1093 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 UVSSAQ2YD98 709 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 TKFCQ3LXA3 575 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 SBK1Q52WX2 424 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 ARTNQ5T4W7 220 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 DTHD1Q6ZMT9 781 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.16□□□□□ -1.74
MCF2-202ENST00000370573 RUFY3Q7L099 469 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 CYB5R4Q7L1T6 521 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 MB21D2Q8IYB1 491 aaPredicted RBP4.16□□□□□ -1.74
MCF2-202ENST00000370573 STK11IPQ8N1F8 1099 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 FBXL6Q8N531 539 aa4.16□□□□□ -1.74
MCF2-202ENST00000370573 FBLIM1Q8WUP2 373 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms