RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 ALG13Q9NP73 1137 aaKnown RBP15.96■□□□□ 0.15
VPS29-201ENST00000360579 ERAP1Q9NZ08 941 aa15.96■□□□□ 0.15
VPS29-201ENST00000360579 TUBE1Q9UJT0 475 aa15.96■□□□□ 0.15
VPS29-201ENST00000360579 LINC01565O15544 149 aa15.95■□□□□ 0.14
VPS29-201ENST00000360579 GTF2F1P35269 517 aaKnown RBP eCLIP15.95■□□□□ 0.14
VPS29-201ENST00000360579 TCF7P36402 384 aaPredicted RBP15.95■□□□□ 0.14
VPS29-201ENST00000360579 COASYQ13057 564 aa15.95■□□□□ 0.14
VPS29-201ENST00000360579 CAMK1Q14012 370 aa15.95■□□□□ 0.14
VPS29-201ENST00000360579 GRIK4Q16099 956 aa15.95■□□□□ 0.14
VPS29-201ENST00000360579 SLC35G1Q2M3R5 365 aa15.95■□□□□ 0.14
VPS29-201ENST00000360579 RUFY4Q6ZNE9 571 aa15.95■□□□□ 0.14
VPS29-201ENST00000360579 SMRP1Q8NCR6 262 aa15.95■□□□□ 0.14
VPS29-201ENST00000360579 SNX27Q96L92 541 aa15.95■□□□□ 0.14
VPS29-201ENST00000360579 SQORQ9Y6N5 450 aa15.95■□□□□ 0.14
VPS29-201ENST00000360579 FSD2A1L4K1 749 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 MBLAC1A4D2B0 266 aaPredicted RBP15.94■□□□□ 0.14
VPS29-201ENST00000360579 LOC730098B7Z3J9 87 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 PIK3CDO00329 1044 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 IFIT3O14879 490 aaKnown RBP15.94■□□□□ 0.14
VPS29-201ENST00000360579 CYTH3O43739 400 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 ST18O60284 1047 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 CSPG5O95196 566 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 STAG3L1P0CL83 205 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 MRPS6P82932 125 aaKnown RBP15.94■□□□□ 0.14
VPS29-201ENST00000360579 AAMPQ13685 434 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 SART3Q15020 963 aaKnown RBP15.94■□□□□ 0.14
VPS29-201ENST00000360579 IER5Q5VY09 327 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 FAM43BQ6ZT52 329 aaPredicted RBP15.94■□□□□ 0.14
VPS29-201ENST00000360579 CYB5R4Q7L1T6 521 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 NPAS4Q8IUM7 802 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 PLEKHM2Q8IWE5 1019 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 PRSS33Q8NF86 280 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 DNAJB3Q8WWF6 145 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 SEPT1Q8WYJ6 367 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 TNPO1Q92973 898 aaKnown RBP15.94■□□□□ 0.14
VPS29-201ENST00000360579 GPRASP2Q96D09 838 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 SUPT16HQ9Y5B9 1047 aaKnown RBP15.94■□□□□ 0.14
VPS29-201ENST00000360579 CDY2AQ9Y6F7 541 aa15.94■□□□□ 0.14
VPS29-201ENST00000360579 MRPL42Q9Y6G3 142 aaKnown RBP15.94■□□□□ 0.14
VPS29-201ENST00000360579 TECTAO75443 2155 aa15.93■□□□□ 0.14
VPS29-201ENST00000360579 RRN3P2A6NIE6 340 aa15.93■□□□□ 0.14
VPS29-201ENST00000360579 M0QZ92 97 aa15.93■□□□□ 0.14
VPS29-201ENST00000360579 ITGB1P05556 798 aa15.93■□□□□ 0.14
VPS29-201ENST00000360579 ZXDAP98168 799 aa15.93■□□□□ 0.14
VPS29-201ENST00000360579 TROAPQ12815 778 aa15.93■□□□□ 0.14
VPS29-201ENST00000360579 CBX2Q14781 532 aaPredicted RBP15.93■□□□□ 0.14
VPS29-201ENST00000360579 CATIPQ7Z7H3 387 aa15.93■□□□□ 0.14
VPS29-201ENST00000360579 CHD1LQ86WJ1 897 aa15.93■□□□□ 0.14
VPS29-201ENST00000360579 SMC5Q8IY18 1101 aa15.93■□□□□ 0.14
VPS29-201ENST00000360579 SPPL3Q8TCT6 385 aa15.93■□□□□ 0.14
VPS29-201ENST00000360579 GLG1Q92896 1179 aa15.93■□□□□ 0.14
VPS29-201ENST00000360579 IRF2BPLQ9H1B7 796 aa15.93■□□□□ 0.14
VPS29-201ENST00000360579 RWDD1Q9H446 243 aaPredicted RBP15.93■□□□□ 0.14
VPS29-201ENST00000360579 SMARCAD1Q9H4L7 1026 aa15.93■□□□□ 0.14
VPS29-201ENST00000360579 CLEC1BQ9P126 229 aa15.93■□□□□ 0.14
VPS29-201ENST00000360579 CD52P31358 61 aa15.92■□□□□ 0.14
VPS29-201ENST00000360579 NRIP1P48552 1158 aa15.92■□□□□ 0.14
VPS29-201ENST00000360579 WTAPQ15007 396 aa15.92■□□□□ 0.14
VPS29-201ENST00000360579 B4GALNT3Q6L9W6 998 aa15.92■□□□□ 0.14
VPS29-201ENST00000360579 CRIPAKQ8N1N5 446 aa15.92■□□□□ 0.14
VPS29-201ENST00000360579 FBXL6Q8N531 539 aa15.92■□□□□ 0.14
VPS29-201ENST00000360579 KLHL23Q8NBE8 558 aa15.92■□□□□ 0.14
VPS29-201ENST00000360579 POF1BQ8WVV4 589 aa15.92■□□□□ 0.14
VPS29-201ENST00000360579 PHF7Q9BWX1 381 aaPredicted RBP15.92■□□□□ 0.14
VPS29-201ENST00000360579 TELO2Q9Y4R8 837 aa15.92■□□□□ 0.14
VPS29-201ENST00000360579 TTC3P53804 2025 aa15.92■□□□□ 0.14
VPS29-201ENST00000360579 KCNA2P16389 499 aa15.91■□□□□ 0.14
VPS29-201ENST00000360579 DNAJB1P25685 340 aa15.91■□□□□ 0.14
VPS29-201ENST00000360579 MARK3P27448 753 aa15.91■□□□□ 0.14
VPS29-201ENST00000360579 UBE3AQ05086 875 aa15.91■□□□□ 0.14
VPS29-201ENST00000360579 SIGLEC14Q08ET2 396 aa15.91■□□□□ 0.14
VPS29-201ENST00000360579 MARCH8Q5T0T0 291 aa15.91■□□□□ 0.14
VPS29-201ENST00000360579 IER5LQ5T953 404 aa15.91■□□□□ 0.14
VPS29-201ENST00000360579 USP17L6PQ6QN14 398 aa15.91■□□□□ 0.14
VPS29-201ENST00000360579 ADGRD2Q7Z7M1 963 aa15.91■□□□□ 0.14
VPS29-201ENST00000360579 RALYLQ86SE5 291 aaKnown RBP15.91■□□□□ 0.14
VPS29-201ENST00000360579 LINC01599Q8WXQ3 324 aa15.91■□□□□ 0.14
VPS29-201ENST00000360579 RRP36Q96EU6 259 aaKnown RBP15.91■□□□□ 0.14
VPS29-201ENST00000360579 AGO3Q9H9G7 860 aaKnown RBP15.91■□□□□ 0.14
VPS29-201ENST00000360579 SEC63Q9UGP8 760 aaKnown RBP15.91■□□□□ 0.14
VPS29-201ENST00000360579 USP15Q9Y4E8 981 aaPredicted RBP15.91■□□□□ 0.14
VPS29-201ENST00000360579 ATG2AQ2TAZ0 1938 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 GSTTP1A0A1W2PQM5 241 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 MEIS2O14770 477 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 MAFGO15525 162 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 SCG2P13521 617 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 ATF7P17544 494 aaPredicted RBP15.9■□□□□ 0.14
VPS29-201ENST00000360579 SMARCA1P28370 1054 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 KIF5BP33176 963 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 IGBP1P78318 339 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 NUCB1Q02818 461 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 PAK2Q13177 524 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 PIBF1Q8WXW3 757 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 PHOX2BQ99453 314 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 MAP3K14Q99558 947 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 CDCA3Q99618 268 aaPredicted RBP15.9■□□□□ 0.14
VPS29-201ENST00000360579 SPZ1Q9BXG8 430 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 FAM49AQ9H0Q0 323 aaPredicted RBP15.9■□□□□ 0.14
VPS29-201ENST00000360579 TLE6Q9H808 572 aa15.9■□□□□ 0.14
VPS29-201ENST00000360579 AAASQ9NRG9 546 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms