RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 PCDHA10Q9Y5I2 948 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 MYH9P35579 1960 aaKnown RBP20.81■□□□□ 0.92
CLN3-204ENST00000357857 TLR2O60603 784 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 KRT18P05783 430 aaKnown RBP20.81■□□□□ 0.92
CLN3-204ENST00000357857 TGFB3P10600 412 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 PLCB2Q00722 1185 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 ARSHQ5FYA8 562 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 KLHL10Q6JEL2 608 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 CYP4F22Q6NT55 531 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 C17orf99Q6UX52 265 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 BCAS3Q9H6U6 928 aa20.81■□□□□ 0.92
CLN3-204ENST00000357857 DOCK3Q8IZD9 2030 aa20.8■□□□□ 0.92
CLN3-204ENST00000357857 LYPLA2O95372 231 aa20.8■□□□□ 0.92
CLN3-204ENST00000357857 UBA1P22314 1058 aaKnown RBP20.8■□□□□ 0.92
CLN3-204ENST00000357857 KCNV1Q6PIU1 500 aa20.8■□□□□ 0.92
CLN3-204ENST00000357857 ENOX1Q8TC92 643 aaKnown RBP20.8■□□□□ 0.92
CLN3-204ENST00000357857 ZIC5Q96T25 663 aa20.8■□□□□ 0.92
CLN3-204ENST00000357857 NPHP3-ACAD11A0A0J9YXS1 232 aa20.79■□□□□ 0.92
CLN3-204ENST00000357857 SLC15A5A6NIM6 579 aa20.79■□□□□ 0.92
CLN3-204ENST00000357857 ZBTB39O15060 712 aa20.79■□□□□ 0.92
CLN3-204ENST00000357857 PSAPP07602 524 aa20.79■□□□□ 0.92
CLN3-204ENST00000357857 PRCPP42785 496 aa20.79■□□□□ 0.92
CLN3-204ENST00000357857 ACTR2P61160 394 aa20.79■□□□□ 0.92
CLN3-204ENST00000357857 PSMC5P62195 406 aa20.79■□□□□ 0.92
CLN3-204ENST00000357857 NEDD9Q14511 834 aa20.79■□□□□ 0.92
CLN3-204ENST00000357857 ARMCX2Q7L311 632 aa20.79■□□□□ 0.92
CLN3-204ENST00000357857 CYFIP1Q7L576 1253 aa20.79■□□□□ 0.92
CLN3-204ENST00000357857 ZNF467Q7Z7K2 595 aaPredicted RBP20.79■□□□□ 0.92
CLN3-204ENST00000357857 DPP9Q86TI2 863 aa20.79■□□□□ 0.92
CLN3-204ENST00000357857 CCDC65Q8IXS2 484 aa20.79■□□□□ 0.92
CLN3-204ENST00000357857 PANK4Q9NVE7 773 aa20.79■□□□□ 0.92
CLN3-204ENST00000357857 AP5Z1O43299 807 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 SORBS3O60504 671 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 SP4Q02446 784 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 CCDC173Q0VFZ6 552 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 COASYQ13057 564 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 PSMD2Q13200 908 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 STIM1Q13586 685 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 UGCGQ16739 394 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 FBXO16Q8IX29 292 aaPredicted RBP20.78■□□□□ 0.92
CLN3-204ENST00000357857 C4orf19Q8IY42 314 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 TRMT44Q8IYL2 757 aaKnown RBP20.78■□□□□ 0.92
CLN3-204ENST00000357857 RUSC1Q9BVN2 902 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 CTNND2Q9UQB3 1225 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 DIS3Q9Y2L1 958 aaKnown RBP20.78■□□□□ 0.92
CLN3-204ENST00000357857 SYNRGQ9UMZ2 1314 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 MYH11P35749 1972 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 EHHADHQ08426 723 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 STK4Q13043 487 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 CRHR2Q13324 411 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 GIT2Q14161 759 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 RINT1Q6NUQ1 792 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 MIS18BP1Q6P0N0 1132 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 ADSSL1Q8N142 457 aa20.78■□□□□ 0.92
CLN3-204ENST00000357857 ARHGEF35A5YM69 484 aa20.77■□□□□ 0.92
CLN3-204ENST00000357857 DKC1O60832 514 aaKnown RBP eCLIP20.77■□□□□ 0.92
CLN3-204ENST00000357857 ADCY5O95622 1261 aa20.77■□□□□ 0.92
CLN3-204ENST00000357857 PPP1R2P41236 205 aa20.77■□□□□ 0.92
CLN3-204ENST00000357857 CACNB1Q02641 598 aaPredicted RBP20.77■□□□□ 0.92
CLN3-204ENST00000357857 RAD51AP2Q09MP3 1159 aa20.77■□□□□ 0.92
CLN3-204ENST00000357857 PAK1Q13153 545 aa20.77■□□□□ 0.92
CLN3-204ENST00000357857 ABHD15Q6UXT9 468 aa20.77■□□□□ 0.92
CLN3-204ENST00000357857 NELFBQ8WX92 580 aa20.77■□□□□ 0.92
CLN3-204ENST00000357857 HPS3Q969F9 1004 aa20.77■□□□□ 0.92
CLN3-204ENST00000357857 MED15Q96RN5 788 aa20.77■□□□□ 0.92
CLN3-204ENST00000357857 REEP2Q9BRK0 252 aa20.77■□□□□ 0.92
CLN3-204ENST00000357857 GABBR1Q9UBS5 961 aa20.77■□□□□ 0.92
CLN3-204ENST00000357857 DDX41Q9UJV9 622 aaKnown RBP20.77■□□□□ 0.92
CLN3-204ENST00000357857 DBR1Q9UK59 544 aaKnown RBP20.77■□□□□ 0.92
CLN3-204ENST00000357857 MAPK8IP1Q9UQF2 711 aa20.77■□□□□ 0.92
CLN3-204ENST00000357857 TELO2Q9Y4R8 837 aa20.77■□□□□ 0.92
CLN3-204ENST00000357857 MGAMO43451 1857 aa20.77■□□□□ 0.92
CLN3-204ENST00000357857 FRMD3A2A2Y4 597 aa20.76■□□□□ 0.91
CLN3-204ENST00000357857 FARP2O94887 1054 aaPredicted RBP20.76■□□□□ 0.91
CLN3-204ENST00000357857 SUPT20HL2P0C7V6 817 aa20.76■□□□□ 0.91
CLN3-204ENST00000357857 STX17P56962 302 aa20.76■□□□□ 0.91
CLN3-204ENST00000357857 NOGQ13253 232 aa20.76■□□□□ 0.91
CLN3-204ENST00000357857 LY6KQ17RY6 165 aa20.76■□□□□ 0.91
CLN3-204ENST00000357857 COBLL1Q53SF7 1204 aa20.76■□□□□ 0.91
CLN3-204ENST00000357857 SARM1Q6SZW1 724 aa20.76■□□□□ 0.91
CLN3-204ENST00000357857 C1orf186Q6ZWK4 172 aa20.76■□□□□ 0.91
CLN3-204ENST00000357857 KIAA0895Q8NCT3 520 aa20.76■□□□□ 0.91
CLN3-204ENST00000357857 ATP6V0A1Q93050 837 aa20.76■□□□□ 0.91
CLN3-204ENST00000357857 PPP1R9BQ96SB3 815 aa20.76■□□□□ 0.91
CLN3-204ENST00000357857 SLC39A2Q9NP94 309 aa20.76■□□□□ 0.91
CLN3-204ENST00000357857 SLC5A4Q9NY91 659 aa20.76■□□□□ 0.91
CLN3-204ENST00000357857 KCND2Q9NZV8 630 aa20.76■□□□□ 0.91
CLN3-204ENST00000357857 RWDD2AQ9UIY3 292 aa20.76■□□□□ 0.91
CLN3-204ENST00000357857 ARID2Q68CP9 1835 aa20.76■□□□□ 0.91
CLN3-204ENST00000357857 CA12O43570 354 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 ATG7O95352 703 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 ARIH2O95376 493 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 GGPS1O95749 300 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 YWHABP31946 246 aaKnown RBP20.75■□□□□ 0.91
CLN3-204ENST00000357857 C1QTNF8P60827 252 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 DEFB115Q30KQ5 88 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 MORN1Q5T089 497 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 SWSAP1Q6NVH7 229 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 MAMDC4Q6UXC1 1216 aa20.75■□□□□ 0.91
CLN3-204ENST00000357857 MAML3Q96JK9 1138 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms