RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 EVPLQ92817 2033 aa20.91■□□□□ 0.94
CLN3-202ENST00000355477 SLKQ9H2G2 1235 aaPredicted RBP20.91■□□□□ 0.94
CLN3-202ENST00000355477 IPO5O00410 1097 aaKnown RBP20.9■□□□□ 0.94
CLN3-202ENST00000355477 CIITAP33076 1130 aa20.9■□□□□ 0.94
CLN3-202ENST00000355477 NPY5RQ15761 445 aa20.9■□□□□ 0.94
CLN3-202ENST00000355477 GRIK4Q16099 956 aa20.9■□□□□ 0.94
CLN3-202ENST00000355477 CPLX2Q6PUV4 134 aaKnown RBP20.9■□□□□ 0.94
CLN3-202ENST00000355477 RUFY4Q6ZNE9 571 aa20.9■□□□□ 0.94
CLN3-202ENST00000355477 PHOSPHO2Q8TCD6 241 aa20.9■□□□□ 0.94
CLN3-202ENST00000355477 SLC9A7Q96T83 725 aa20.9■□□□□ 0.94
CLN3-202ENST00000355477 PCDHA4Q9UN74 947 aa20.9■□□□□ 0.94
CLN3-202ENST00000355477 PCDHA11Q9Y5I1 949 aa20.9■□□□□ 0.94
CLN3-202ENST00000355477 CTDNEP1O95476 244 aa20.89■□□□□ 0.93
CLN3-202ENST00000355477 CTSHP09668 335 aa20.89■□□□□ 0.93
CLN3-202ENST00000355477 STAT5BP51692 787 aa20.89■□□□□ 0.93
CLN3-202ENST00000355477 WDR5P61964 334 aaKnown RBP20.89■□□□□ 0.93
CLN3-202ENST00000355477 PRR16Q569H4 304 aa20.89■□□□□ 0.93
CLN3-202ENST00000355477 ABHD15Q6UXT9 468 aa20.89■□□□□ 0.93
CLN3-202ENST00000355477 TMCO2Q7Z6W1 182 aaPredicted RBP20.89■□□□□ 0.93
CLN3-202ENST00000355477 LENG9Q96B70 501 aa20.89■□□□□ 0.93
CLN3-202ENST00000355477 ZBTB10Q96DT7 871 aa20.89■□□□□ 0.93
CLN3-202ENST00000355477 ZNF577Q9BSK1 485 aa20.89■□□□□ 0.93
CLN3-202ENST00000355477 AZI2Q9H6S1 392 aa20.89■□□□□ 0.93
CLN3-202ENST00000355477 SLC28A3Q9HAS3 691 aa20.89■□□□□ 0.93
CLN3-202ENST00000355477 IGKV6D-21A0A0A0MT36 114 aa20.88■□□□□ 0.93
CLN3-202ENST00000355477 M0R2N6 131 aa20.88■□□□□ 0.93
CLN3-202ENST00000355477 INSRRP14616 1297 aa20.88■□□□□ 0.93
CLN3-202ENST00000355477 IGBP1P78318 339 aa20.88■□□□□ 0.93
CLN3-202ENST00000355477 DEFB103AP81534 67 aa20.88■□□□□ 0.93
CLN3-202ENST00000355477 PLCB4Q15147 1175 aa20.88■□□□□ 0.93
CLN3-202ENST00000355477 ANKRD1Q15327 319 aa20.88■□□□□ 0.93
CLN3-202ENST00000355477 PLPPR4Q7Z2D5 763 aa20.88■□□□□ 0.93
CLN3-202ENST00000355477 HERC6Q8IVU3 1022 aa20.88■□□□□ 0.93
CLN3-202ENST00000355477 BLIDQ8IZY5 108 aa20.88■□□□□ 0.93
CLN3-202ENST00000355477 KCNJ14Q9UNX9 436 aa20.88■□□□□ 0.93
CLN3-202ENST00000355477 MBLAC1A4D2B0 266 aaPredicted RBP20.87■□□□□ 0.93
CLN3-202ENST00000355477 CAND2O75155 1236 aa20.87■□□□□ 0.93
CLN3-202ENST00000355477 LARGE1O95461 756 aa20.87■□□□□ 0.93
CLN3-202ENST00000355477 FOSL2P15408 326 aa20.87■□□□□ 0.93
CLN3-202ENST00000355477 KCNJ6P48051 423 aa20.87■□□□□ 0.93
CLN3-202ENST00000355477 USP11P51784 963 aa20.87■□□□□ 0.93
CLN3-202ENST00000355477 SETQ01105 290 aaPredicted RBP20.87■□□□□ 0.93
CLN3-202ENST00000355477 IKBKEQ14164 716 aa20.87■□□□□ 0.93
CLN3-202ENST00000355477 ME3Q16798 604 aa20.87■□□□□ 0.93
CLN3-202ENST00000355477 PLEKHG4Q58EX7 1191 aa20.87■□□□□ 0.93
CLN3-202ENST00000355477 FAM26DQ5JW98 314 aa20.87■□□□□ 0.93
CLN3-202ENST00000355477 NECAB1Q8N987 351 aa20.87■□□□□ 0.93
CLN3-202ENST00000355477 DAGLBQ8NCG7 672 aa20.87■□□□□ 0.93
CLN3-202ENST00000355477 DBF4BQ8NFT6 615 aa20.87■□□□□ 0.93
CLN3-202ENST00000355477 PRDM12Q9H4Q4 367 aa20.87■□□□□ 0.93
CLN3-202ENST00000355477 GJB4Q9NTQ9 266 aa20.87■□□□□ 0.93
CLN3-202ENST00000355477 TUBE1Q9UJT0 475 aa20.87■□□□□ 0.93
CLN3-202ENST00000355477 REV3LO60673 3130 aa20.86■□□□□ 0.93
CLN3-202ENST00000355477 ABHD14A-ACY1A0A1B0GW23 586 aa20.86■□□□□ 0.93
CLN3-202ENST00000355477 EIF5BO60841 1220 aaKnown RBP20.86■□□□□ 0.93
CLN3-202ENST00000355477 CDKL5O76039 1030 aa20.86■□□□□ 0.93
CLN3-202ENST00000355477 CHRNA1P02708 482 aa20.86■□□□□ 0.93
CLN3-202ENST00000355477 CA3P07451 260 aa20.86■□□□□ 0.93
CLN3-202ENST00000355477 NEK4P51957 841 aa20.86■□□□□ 0.93
CLN3-202ENST00000355477 CCDC60Q8IWA6 550 aaPredicted RBP20.86■□□□□ 0.93
CLN3-202ENST00000355477 SLC17A8Q8NDX2 589 aa20.86■□□□□ 0.93
CLN3-202ENST00000355477 TBCKQ8TEA7 893 aa20.86■□□□□ 0.93
CLN3-202ENST00000355477 TRAPPC12Q8WVT3 735 aa20.86■□□□□ 0.93
CLN3-202ENST00000355477 TBC1D22BQ9NU19 505 aa20.86■□□□□ 0.93
CLN3-202ENST00000355477 TRPC6Q9Y210 931 aa20.86■□□□□ 0.93
CLN3-202ENST00000355477 RRN3P2A6NIE6 340 aa20.85■□□□□ 0.93
CLN3-202ENST00000355477 MSH4O15457 936 aa20.85■□□□□ 0.93
CLN3-202ENST00000355477 ARHGEF15O94989 841 aa20.85■□□□□ 0.93
CLN3-202ENST00000355477 MKRN4PQ13434 485 aaPredicted RBP20.85■□□□□ 0.93
CLN3-202ENST00000355477 PPP2R2DQ66LE6 453 aa20.85■□□□□ 0.93
CLN3-202ENST00000355477 SWSAP1Q6NVH7 229 aa20.85■□□□□ 0.93
CLN3-202ENST00000355477 TAF2Q6P1X5 1199 aa20.85■□□□□ 0.93
CLN3-202ENST00000355477 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.85■□□□□ 0.93
CLN3-202ENST00000355477 RPAINQ86UA6 219 aa20.85■□□□□ 0.93
CLN3-202ENST00000355477 MAFAQ8NHW3 353 aaPredicted RBP20.85■□□□□ 0.93
CLN3-202ENST00000355477 DNAJB3Q8WWF6 145 aa20.85■□□□□ 0.93
CLN3-202ENST00000355477 PHF20Q9BVI0 1012 aa20.85■□□□□ 0.93
CLN3-202ENST00000355477 STK36Q9NRP7 1315 aa20.84■□□□□ 0.93
CLN3-202ENST00000355477 POTEB3A0JP26 581 aa20.84■□□□□ 0.93
CLN3-202ENST00000355477 BACH1O14867 736 aa20.84■□□□□ 0.93
CLN3-202ENST00000355477 ATP4AP20648 1035 aa20.84■□□□□ 0.93
CLN3-202ENST00000355477 MGAT3Q09327 533 aa20.84■□□□□ 0.93
CLN3-202ENST00000355477 C8orf34Q49A92 452 aa20.84■□□□□ 0.93
CLN3-202ENST00000355477 GALNT17Q6IS24 598 aa20.84■□□□□ 0.93
CLN3-202ENST00000355477 ZNF746Q6NUN9 644 aaPredicted RBP20.84■□□□□ 0.93
CLN3-202ENST00000355477 POTEBQ6S5H4 581 aa20.84■□□□□ 0.93
CLN3-202ENST00000355477 FAM177A1Q8N128 213 aaPredicted RBP20.84■□□□□ 0.93
CLN3-202ENST00000355477 GJA10Q969M2 543 aa20.84■□□□□ 0.93
CLN3-202ENST00000355477 ZNF302Q9NR11 478 aa20.84■□□□□ 0.93
CLN3-202ENST00000355477 FDPSP14324 419 aaKnown RBP20.83■□□□□ 0.93
CLN3-202ENST00000355477 SLC26A2P50443 739 aa20.83■□□□□ 0.93
CLN3-202ENST00000355477 ADGRE1Q14246 886 aa20.83■□□□□ 0.93
CLN3-202ENST00000355477 FAM160B1Q5W0V3 765 aa20.83■□□□□ 0.93
CLN3-202ENST00000355477 MIS18BP1Q6P0N0 1132 aa20.83■□□□□ 0.93
CLN3-202ENST00000355477 PDXDC2PQ6P474 469 aa20.83■□□□□ 0.93
CLN3-202ENST00000355477 GTF3C6Q969F1 213 aa20.83■□□□□ 0.93
CLN3-202ENST00000355477 ORC3Q9UBD5 711 aaPredicted RBP20.83■□□□□ 0.93
CLN3-202ENST00000355477 CYP3A7-CYP3A51PA0A087WV96 503 aa20.82■□□□□ 0.92
CLN3-202ENST00000355477 LCHNA4D1U4 455 aa20.82■□□□□ 0.92
CLN3-202ENST00000355477 KIF28PB7ZC32 967 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms