RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 NQO1P15559 274 aaKnown RBP7.42□□□□□ -1.22
VPS39-202ENST00000348544 PRPHP41219 470 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 MMP13P45452 471 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 LRRC41Q15345 812 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 PROSER2Q86WR7 435 aaPredicted RBP7.42□□□□□ -1.22
VPS39-202ENST00000348544 ERICH1Q86X53 443 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 FAM133AQ8N9E0 248 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 CCHCR1Q8TD31 782 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 CNKSR1Q969H4 720 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 ZBTB10Q96DT7 871 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.42□□□□□ -1.222e-6■■■■□ 19.5
VPS39-202ENST00000348544 TRIM51Q9BSJ1 452 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 TANGO6Q9C0B7 1094 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 BLOC1S4Q9NUP1 217 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 SPATS2LQ9NUQ6 558 aaKnown RBP7.42□□□□□ -1.22
VPS39-202ENST00000348544 GGT7Q9UJ14 662 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 ERVV-2B6SEH9 535 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 KRIT1O00522 736 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 LINGO3P0C6S8 592 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 POU5F1Q01860 360 aaKnown RBP7.42□□□□□ -1.22
VPS39-202ENST00000348544 ADCY2Q08462 1091 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 RAPGEF1Q13905 1077 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 DYMQ7RTS9 669 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 DNAJC10Q8IXB1 793 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 GUF1Q8N442 669 aaKnown RBP7.42□□□□□ -1.22
VPS39-202ENST00000348544 ANKS4BQ8N8V4 417 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 ZNF384Q8TF68 577 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 PBKQ96KB5 322 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 SELENOSQ9BQE4 189 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 TRMT112Q9UI30 125 aaKnown RBP7.42□□□□□ -1.22
VPS39-202ENST00000348544 ATP8A1Q9Y2Q0 1164 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 NR2E1Q9Y466 385 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 SLIT2O94813 1529 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 CACNA1SQ13698 1873 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 CCDC88AQ3V6T2 1871 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 COL1A1P02452 1464 aaPredicted RBP7.41□□□□□ -1.22
VPS39-202ENST00000348544 USP17L12C9JPN9 530 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 USP17L21D6R901 530 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 IGF2BP3O00425 579 aaKnown RBP eCLIP7.41□□□□□ -1.22
VPS39-202ENST00000348544 PDE8AO60658 829 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 UPP2O95045 317 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 KRT16P08779 473 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 IFI35P80217 286 aaPredicted RBP7.41□□□□□ -1.22
VPS39-202ENST00000348544 LRRC63Q05C16 580 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 GRB10Q13322 594 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 BLMHQ13867 455 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 TMED8Q6PL24 325 aaPredicted RBP7.41□□□□□ -1.22
VPS39-202ENST00000348544 ARHGAP27Q6ZUM4 889 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 SPDYE1Q8NFV5 336 aaPredicted RBP7.41□□□□□ -1.22
VPS39-202ENST00000348544 DDX17Q92841 729 aaKnown RBP7.41□□□□□ -1.22
VPS39-202ENST00000348544 SAAL1Q96ER3 474 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 AK8Q96MA6 479 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 PRMT1Q99873 361 aaKnown RBP7.41□□□□□ -1.22
VPS39-202ENST00000348544 SH3GL3Q99963 347 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 TRIM31Q9BZY9 425 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 ARHGEF10LQ9HCE6 1279 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 LUC7LQ9NQ29 371 aaKnown RBP7.41□□□□□ -1.22
VPS39-202ENST00000348544 SH3GLB2Q9NR46 395 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 TCP11L1Q9NUJ3 509 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 CORO1CQ9ULV4 474 aaPredicted RBP7.41□□□□□ -1.22
VPS39-202ENST00000348544 CASZ1Q86V15 1759 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 A6NHS1 94 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 EIF4E1BA6NMX2 242 aaKnown RBP7.41□□□□□ -1.22
VPS39-202ENST00000348544 BTNL10A8MVZ5 291 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 LAD1O00515 517 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 AP1G2O75843 785 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 OAS1P00973 400 aaKnown RBP7.41□□□□□ -1.22
VPS39-202ENST00000348544 OR52Z1P0C646 297 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 TECP42680 631 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 PTK2Q05397 1052 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 KLHL30Q0D2K2 578 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 GALNTL6Q49A17 601 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 ZCWPW2Q504Y3 356 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 UNC13DQ70J99 1090 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 ZNF571Q7Z3V5 609 aaPredicted RBP7.41□□□□□ -1.22
VPS39-202ENST00000348544 RASGEF1CQ8N431 466 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 KIF2BQ8N4N8 673 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 RNF25Q96BH1 459 aaPredicted RBP7.41□□□□□ -1.22
VPS39-202ENST00000348544 BRIP1Q9BX63 1249 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 NUCKS1Q9H1E3 243 aaKnown RBP7.41□□□□□ -1.22
VPS39-202ENST00000348544 GANQ9H2C0 597 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 SLITRK6Q9H5Y7 841 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 ECT2Q9H8V3 914 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 ZDHHC18Q9NUE0 388 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 AIPL1Q9NZN9 384 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 ABCF2Q9UG63 623 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 A0A1B0GUL6 1792 aa7.41□□□□□ -1.22
VPS39-202ENST00000348544 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.41□□□□□ -1.22
VPS39-202ENST00000348544 C1orf167Q5SNV9 1468 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 PCDH11XQ9BZA7 1347 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 PCDH11YQ9BZA8 1340 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 CCDC188H7C350 402 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 STXBP3O00186 592 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 CYTH3O43739 400 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 CYP2D6P10635 497 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 IFNAR2P48551 515 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 EIF3BP55884 814 aaKnown RBP7.4□□□□□ -1.22
VPS39-202ENST00000348544 AMPD3Q01432 767 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 SLMAPQ14BN4 828 aa7.4□□□□□ -1.22
VPS39-202ENST00000348544 THEMIS2Q5TEJ8 643 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 641 ms