RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 KRT79Q5XKE5 535 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 PPP4R3AQ6IN85 833 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 NOVA2Q9UNW9 492 aaKnown RBP24.5■■□□□ 1.51
TRIM28-202ENST00000341753 GOLGA6L7A0A1B0GV03 622 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 TMCO5BA8MYB1 307 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 F8W031 263 aaPredicted RBP24.5■■□□□ 1.51
TRIM28-202ENST00000341753 DNM1LO00429 736 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 GYS1P13807 737 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 PTK2Q05397 1052 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 TEX11Q8IYF3 940 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 SPZ1Q9BXG8 430 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 OSBPL7Q9BZF2 842 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 RIC8AQ9NPQ8 531 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 PANK4Q9NVE7 773 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 POLLQ9UGP5 575 aa24.5■■□□□ 1.51
TRIM28-202ENST00000341753 KIF4AO95239 1232 aa24.49■■□□□ 1.51
TRIM28-202ENST00000341753 PDHBP11177 359 aa24.49■■□□□ 1.51
TRIM28-202ENST00000341753 SLC12A6Q9UHW9 1150 aa24.49■■□□□ 1.51
TRIM28-202ENST00000341753 TMEM59LQ9UK28 342 aa24.49■■□□□ 1.51
TRIM28-202ENST00000341753 RIMBP2O15034 1052 aa24.49■■□□□ 1.51
TRIM28-202ENST00000341753 SART1O43290 800 aaKnown RBP24.49■■□□□ 1.51
TRIM28-202ENST00000341753 DAPK3O43293 454 aa24.49■■□□□ 1.51
TRIM28-202ENST00000341753 RASSF9O75901 435 aa24.49■■□□□ 1.51
TRIM28-202ENST00000341753 RDXP35241 583 aaKnown RBP24.49■■□□□ 1.51
TRIM28-202ENST00000341753 EPS15P42566 896 aa24.49■■□□□ 1.51
TRIM28-202ENST00000341753 TNNI2P48788 182 aa24.49■■□□□ 1.51
TRIM28-202ENST00000341753 SMTNP53814 917 aa24.49■■□□□ 1.51
TRIM28-202ENST00000341753 DDR1Q08345 913 aa24.49■■□□□ 1.51
TRIM28-202ENST00000341753 FAM26FQ5R3K3 315 aa24.49■■□□□ 1.51
TRIM28-202ENST00000341753 MFSD14BQ5SR56 506 aa24.49■■□□□ 1.51
TRIM28-202ENST00000341753 CHADLQ6NUI6 762 aa24.49■■□□□ 1.51
TRIM28-202ENST00000341753 HAUS2Q9NVX0 235 aa24.49■■□□□ 1.51
TRIM28-202ENST00000341753 AMACRQ9UHK6 382 aa24.49■■□□□ 1.51
TRIM28-202ENST00000341753 DNAJC19Q96DA6 116 aa24.48■■□□□ 1.51
TRIM28-202ENST00000341753 ZHX3Q9H4I2 956 aa24.48■■□□□ 1.51
TRIM28-202ENST00000341753 TAF1LQ8IZX4 1826 aa24.48■■□□□ 1.51
TRIM28-202ENST00000341753 USP17L5A8MUK1 530 aa24.48■■□□□ 1.51
TRIM28-202ENST00000341753 C6orf229H3BNL8 230 aa24.48■■□□□ 1.51
TRIM28-202ENST00000341753 CDK8P49336 464 aa24.48■■□□□ 1.51
TRIM28-202ENST00000341753 CLEC10AQ8IUN9 316 aa24.48■■□□□ 1.51
TRIM28-202ENST00000341753 SEPT12Q8IYM1 358 aa24.48■■□□□ 1.51
TRIM28-202ENST00000341753 SYN2Q92777 582 aaPredicted RBP24.48■■□□□ 1.51
TRIM28-202ENST00000341753 CELF4Q9BZC1 486 aaKnown RBP24.48■■□□□ 1.51
TRIM28-202ENST00000341753 CHUKO15111 745 aa24.48■■□□□ 1.51
TRIM28-202ENST00000341753 FXR2P51116 673 aaKnown RBP eCLIP24.48■■□□□ 1.512e-12■■■■□ 19.6
TRIM28-202ENST00000341753 ZNF571Q7Z3V5 609 aaPredicted RBP24.48■■□□□ 1.51
TRIM28-202ENST00000341753 ARFGAP2Q8N6H7 521 aa24.48■■□□□ 1.51
TRIM28-202ENST00000341753 EYA3Q99504 573 aa24.48■■□□□ 1.51
TRIM28-202ENST00000341753 TRIM31Q9BZY9 425 aa24.48■■□□□ 1.51
TRIM28-202ENST00000341753 NUCKS1Q9H1E3 243 aaKnown RBP24.48■■□□□ 1.51
TRIM28-202ENST00000341753 DPH5Q9H2P9 285 aa24.48■■□□□ 1.51
TRIM28-202ENST00000341753 GGA1Q9UJY5 639 aa24.48■■□□□ 1.51
TRIM28-202ENST00000341753 NOC2LQ9Y3T9 749 aaKnown RBP24.48■■□□□ 1.51
TRIM28-202ENST00000341753 NHSQ6T4R5 1651 aa24.47■■□□□ 1.51
TRIM28-202ENST00000341753 PHF20L1A8MW92 1017 aa24.47■■□□□ 1.51
TRIM28-202ENST00000341753 GSTO1P78417 241 aa24.47■■□□□ 1.51
TRIM28-202ENST00000341753 UBE2SQ16763 222 aa24.47■■□□□ 1.51
TRIM28-202ENST00000341753 CEP57Q86XR8 500 aa24.47■■□□□ 1.51
TRIM28-202ENST00000341753 TRAPPC3O43617 180 aa24.47■■□□□ 1.51
TRIM28-202ENST00000341753 SLURP2P0DP57 97 aa24.47■■□□□ 1.51
TRIM28-202ENST00000341753 MAGOHP61326 146 aaKnown RBP24.47■■□□□ 1.51
TRIM28-202ENST00000341753 PICALMQ13492 652 aa24.47■■□□□ 1.51
TRIM28-202ENST00000341753 TRIM59Q8IWR1 403 aa24.47■■□□□ 1.51
TRIM28-202ENST00000341753 PROM2Q8N271 834 aa24.47■■□□□ 1.51
TRIM28-202ENST00000341753 METTL13Q8N6R0 699 aa24.47■■□□□ 1.51
TRIM28-202ENST00000341753 RAPGEF5Q92565 580 aa24.47■■□□□ 1.51
TRIM28-202ENST00000341753 MAGOHBQ96A72 148 aaKnown RBP24.47■■□□□ 1.51
TRIM28-202ENST00000341753 LZTS2Q9BRK4 669 aa24.47■■□□□ 1.51
TRIM28-202ENST00000341753 MXD3Q9BW11 206 aa24.47■■□□□ 1.51
TRIM28-202ENST00000341753 MAST2Q6P0Q8 1798 aa24.46■■□□□ 1.51
TRIM28-202ENST00000341753 E9PMD0 336 aa24.46■■□□□ 1.51
TRIM28-202ENST00000341753 KRIT1O00522 736 aa24.46■■□□□ 1.51
TRIM28-202ENST00000341753 CCDC172P0C7W6 258 aa24.46■■□□□ 1.51
TRIM28-202ENST00000341753 SLC9A1P19634 815 aa24.46■■□□□ 1.51
TRIM28-202ENST00000341753 CDR1P51861 262 aa24.46■■□□□ 1.51
TRIM28-202ENST00000341753 EIF6P56537 245 aaKnown RBP24.46■■□□□ 1.51
TRIM28-202ENST00000341753 PPP4CP60510 307 aa24.46■■□□□ 1.51
TRIM28-202ENST00000341753 LRIG3Q6UXM1 1119 aa24.46■■□□□ 1.51
TRIM28-202ENST00000341753 MDM1Q8TC05 714 aa24.46■■□□□ 1.51
TRIM28-202ENST00000341753 SCFD2Q8WU76 684 aa24.46■■□□□ 1.51
TRIM28-202ENST00000341753 SEC16BQ96JE7 1060 aa24.46■■□□□ 1.51
TRIM28-202ENST00000341753 GANQ9H2C0 597 aa24.46■■□□□ 1.51
TRIM28-202ENST00000341753 USP11P51784 963 aa24.46■■□□□ 1.51
TRIM28-202ENST00000341753 TTI1O43156 1089 aa24.45■■□□□ 1.5
TRIM28-202ENST00000341753 C1orf131Q8NDD1 294 aaKnown RBP24.45■■□□□ 1.5
TRIM28-202ENST00000341753 LRRC45Q96CN5 670 aa24.45■■□□□ 1.5
TRIM28-202ENST00000341753 CEP95Q96GE4 821 aa24.45■■□□□ 1.5
TRIM28-202ENST00000341753 SCLT1Q96NL6 688 aa24.45■■□□□ 1.5
TRIM28-202ENST00000341753 MARCH6O60337 910 aa24.45■■□□□ 1.5
TRIM28-202ENST00000341753 PPP2R2AP63151 447 aa24.45■■□□□ 1.5
TRIM28-202ENST00000341753 PSMD2Q13200 908 aa24.45■■□□□ 1.5
TRIM28-202ENST00000341753 CUL1Q13616 776 aa24.45■■□□□ 1.5
TRIM28-202ENST00000341753 TMEM119Q4V9L6 283 aa24.45■■□□□ 1.5
TRIM28-202ENST00000341753 OPLAHO14841 1288 aa24.44■■□□□ 1.5
TRIM28-202ENST00000341753 KCNH2Q12809 1159 aa24.44■■□□□ 1.5
TRIM28-202ENST00000341753 BYSLQ13895 437 aaKnown RBP24.44■■□□□ 1.5
TRIM28-202ENST00000341753 KRT71Q3SY84 523 aa24.44■■□□□ 1.5
TRIM28-202ENST00000341753 SPAG5Q96R06 1193 aa24.44■■□□□ 1.5
TRIM28-202ENST00000341753 AIPL1Q9NZN9 384 aa24.44■■□□□ 1.5
TRIM28-202ENST00000341753 PGRMC1O00264 195 aaKnown RBP24.44■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms