RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 E7EVH7 732 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 CTDSPL2Q05D32 466 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 CXCL17Q6UXB2 119 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 GOLGA5Q8TBA6 731 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 MRPL44Q9H9J2 332 aaKnown RBP9.2□□□□□ -0.94
HMGB1-203ENST00000341423 GDPD2Q9HCC8 539 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 INSL6Q9Y581 213 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 SYNJ2BP-COX16A0A087WUM0 186 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 SFNP31947 248 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 CENPCQ03188 943 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 WASHC5Q12768 1159 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 GIT2Q14161 759 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 NOL9Q5SY16 702 aaKnown RBP9.2□□□□□ -0.94
HMGB1-203ENST00000341423 MOB2Q70IA6 237 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 UHRF1Q96T88 793 aaPredicted RBP9.2□□□□□ -0.94
HMGB1-203ENST00000341423 COX16Q9P0S2 106 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 ZMYM4Q5VZL5 1548 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 hCG_1984214I3L0E3 225 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 IRF6O14896 467 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 RRP8O43159 456 aaKnown RBP9.2□□□□□ -0.94
HMGB1-203ENST00000341423 HBP1O60381 514 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 DEXIO95424 95 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 CASP6P55212 293 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 MTMR14Q8NCE2 650 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 COG5Q9UP83 839 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 GDAQ9Y2T3 454 aa9.2□□□□□ -0.94
HMGB1-203ENST00000341423 POTEB3A0JP26 581 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 SPTLC2O15270 562 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 PLPP4Q5VZY2 271 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 POTEBQ6S5H4 581 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 SETD7Q8WTS6 366 aaKnown RBP9.19□□□□□ -0.94
HMGB1-203ENST00000341423 GCNT3O95395 438 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 CXCL14O95715 111 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 CKBP12277 381 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 PRDX5P30044 214 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 CAP2P40123 477 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 RPL10AP62906 217 aaKnown RBP9.19□□□□□ -0.94
HMGB1-203ENST00000341423 KRT24Q2M2I5 525 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 SRBD1Q8N5C6 995 aaKnown RBP9.19□□□□□ -0.94
HMGB1-203ENST00000341423 LRRC46Q96FV0 321 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 INTS2Q9H0H0 1204 aaKnown RBP9.19□□□□□ -0.94
HMGB1-203ENST00000341423 ADCY10Q96PN6 1610 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 UTYO14607 1347 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 GLUD1P00367 558 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 DCAF17Q5H9S7 520 aaPredicted RBP9.19□□□□□ -0.94
HMGB1-203ENST00000341423 FAM178BQ8IXR5 827 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 CYP4F11Q9HBI6 524 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 TUBE1Q9UJT0 475 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 ANAPC5Q9UJX4 755 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 FIBPO43427 364 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 ANO4Q32M45 955 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 CDC42EP5Q6NZY7 148 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 HVCN1Q96D96 273 aa9.19□□□□□ -0.94
HMGB1-203ENST00000341423 ZSCAN10Q96SZ4 725 aaPredicted RBP9.19□□□□□ -0.94
HMGB1-203ENST00000341423 GHRP10912 638 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 ZNF568Q3ZCX4 644 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 SLFN12LQ6IEE8 588 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 ZNF280DQ6N043 979 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 XRRA1Q6P2D8 792 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 PANK2Q9BZ23 570 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 SENP2Q9HC62 589 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 ELOVL2Q9NXB9 296 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 SGPL1O95470 568 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 PGK2P07205 417 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 ACRP10323 421 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 LRRC24Q50LG9 513 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 GPR142Q7Z601 462 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 DSG4Q86SJ6 1040 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 KBTBD3Q8NAB2 608 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 POLMQ9NP87 494 aaPredicted RBP9.18□□□□□ -0.94
HMGB1-203ENST00000341423 SLC9A2Q9UBY0 812 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 TJP2Q9UDY2 1190 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 YBX3P16989 372 aaKnown RBP eCLIP9.18□□□□□ -0.946e-17■■□□□ 12.5
HMGB1-203ENST00000341423 GRIK1P39086 918 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 DYNLL1P63167 89 aaKnown RBP9.18□□□□□ -0.94
HMGB1-203ENST00000341423 DDR1Q08345 913 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 DRP2Q13474 957 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 PEX6Q13608 980 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 CCDC91Q7Z6B0 441 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 SH3RF3Q8TEJ3 882 aaPredicted RBP9.18□□□□□ -0.94
HMGB1-203ENST00000341423 APBB2Q92870 758 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 CHMP6Q96FZ7 201 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 IFT122Q9HBG6 1241 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 TBC1D3BA6NDS4 549 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 CHL1O00533 1208 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 ZNF263O14978 683 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 CBFA2T2O43439 604 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 PAX3P23760 479 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 UBE3CQ15386 1083 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 TBC1D19Q8N5T2 526 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 SLC9A7Q96T83 725 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 GAD1Q99259 594 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 MYO9BQ13459 2157 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 ZNF541Q9H0D2 1346 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 NCAPD2Q15021 1401 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 SELPP16109 830 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 PRPHP41219 470 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 PDE1BQ01064 536 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 TMEM62Q0P6H9 643 aa9.18□□□□□ -0.94
HMGB1-203ENST00000341423 ARL13BQ3SXY8 428 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms