RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 TLR3O15455 904 aaKnown RBP13.76□□□□□ -0.21
USP47-202ENST00000339865 PRDM1O75626 825 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 COPB1P53618 953 aaKnown RBP13.76□□□□□ -0.21
USP47-202ENST00000339865 POLGP54098 1239 aaPredicted RBP13.76□□□□□ -0.21
USP47-202ENST00000339865 CTDSPL2Q05D32 466 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 ZNF507Q8TCN5 953 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 NEK9Q8TD19 979 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 CYGBQ8WWM9 190 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 SLC12A6Q9UHW9 1150 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 NRBP1Q9UHY1 535 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 MID2Q9UJV3 735 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 GOLGA8IPA6NC78 632 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 WDR64B1ANS9 1081 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 GOLGA8SH3BPF8 625 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 GUCA1CO95843 209 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 HORMAD1Q86X24 394 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 CMTR1Q8N1G2 835 aaKnown RBP13.76□□□□□ -0.21
USP47-202ENST00000339865 STAMBPL1Q96FJ0 436 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 PARD6BQ9BYG5 372 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 C10orf88Q9H8K7 445 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 PIDD1Q9HB75 910 aa13.76□□□□□ -0.21
USP47-202ENST00000339865 PRG3Q9Y2Y8 225 aaPredicted RBP13.76□□□□□ -0.21
USP47-202ENST00000339865 COPEO14579 308 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 PYGMP11217 842 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 ZNF555Q8NEP9 628 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 DHX38Q92620 1227 aaKnown RBP13.75□□□□□ -0.21
USP47-202ENST00000339865 CNOT6LQ96LI5 555 aaKnown RBP13.75□□□□□ -0.21
USP47-202ENST00000339865 RUSC2Q8N2Y8 1516 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 TTC21BQ7Z4L5 1316 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 CCDC151A5D8V7 595 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 TIMM10P62072 90 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 CUL3Q13618 768 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 GJA10Q969M2 543 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 ARIH1Q9Y4X5 557 aaPredicted RBP13.75□□□□□ -0.21
USP47-202ENST00000339865 UBE4BO95155 1302 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 PDCLQ13371 301 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 ADALQ6DHV7 355 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 KSR2Q6VAB6 950 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.75□□□□□ -0.213e-6■■■■■ 50.8
USP47-202ENST00000339865 SMAD5Q99717 465 aaKnown RBP13.75□□□□□ -0.21
USP47-202ENST00000339865 FHDC1Q9C0D6 1143 aaPredicted RBP13.75□□□□□ -0.21
USP47-202ENST00000339865 PARVGQ9HBI0 331 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 PFKFB1P16118 471 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 CASP14P31944 242 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 TBC1D10BQ4KMP7 808 aaPredicted RBP13.75□□□□□ -0.21
USP47-202ENST00000339865 DTNBP1Q96EV8 351 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 NFU1Q9UMS0 254 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 NCOA2Q15596 1464 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 FTCDO95954 541 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 KRT1P04264 644 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 C7orf31Q8N865 590 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 ZNF212Q9UDV6 495 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 TSR3Q9UJK0 312 aaKnown RBP13.75□□□□□ -0.21
USP47-202ENST00000339865 STXBP3O00186 592 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 IPO5O00410 1097 aaKnown RBP13.75□□□□□ -0.21
USP47-202ENST00000339865 ZBED4O75132 1171 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 XKR9Q5GH70 373 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 UBAP1Q9NZ09 502 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 TPCN1Q9ULQ1 816 aa13.75□□□□□ -0.21
USP47-202ENST00000339865 ANKRD36BQ8N2N9 1353 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 CCDC78A2IDD5 438 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 IRS4O14654 1257 aaPredicted RBP13.74□□□□□ -0.21
USP47-202ENST00000339865 TOMM70O94826 608 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 COPS2P61201 443 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 RBM6P78332 1123 aaKnown RBP13.74□□□□□ -0.21
USP47-202ENST00000339865 DR1Q01658 176 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 APLFQ8IW19 511 aaPredicted RBP13.74□□□□□ -0.21
USP47-202ENST00000339865 SLC13A1Q9BZW2 595 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 LMTK3Q96Q04 1460 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 IL10P22301 178 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 BBS9Q3SYG4 887 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 HSPH1Q92598 858 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 LBHD1Q9BQE6 289 aaPredicted RBP13.74□□□□□ -0.21
USP47-202ENST00000339865 HPS4Q9NQG7 708 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 SLC52A1Q9NWF4 448 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 RGS5O15539 181 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 ARL4AP40617 200 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 CLCN6P51797 869 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 RUNX1T1Q06455 604 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 NR5A1Q13285 461 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 MAPRE1Q15691 268 aaKnown RBP13.74□□□□□ -0.21
USP47-202ENST00000339865 TMC5Q6UXY8 1006 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 RNF135Q8IUD6 432 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 TUBGCP2Q9BSJ2 902 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 NSMCE4AQ9NXX6 385 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 ZNF18P17022 549 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 PPARGP37231 505 aaPredicted RBP13.74□□□□□ -0.21
USP47-202ENST00000339865 CLK1P49759 484 aaKnown RBP13.74□□□□□ -0.21
USP47-202ENST00000339865 ARHGAP17Q68EM7 881 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.74□□□□□ -0.21
USP47-202ENST00000339865 BBS2Q9BXC9 721 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 SNRNP27Q8WVK2 155 aaKnown RBP13.74□□□□□ -0.21
USP47-202ENST00000339865 OPTNQ96CV9 577 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 PBKQ96KB5 322 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 FAM227BQ96M60 508 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 PLAAQ9Y263 795 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 ALDH1L1O75891 902 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 DLGAP3O95886 979 aa13.74□□□□□ -0.21
USP47-202ENST00000339865 LBRQ14739 615 aaKnown RBP13.74□□□□□ -0.21
USP47-202ENST00000339865 MLXIPQ9HAP2 919 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms