RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CUTAO60888 179 aa24.89■■□□□ 1.58
SDC3-202ENST00000339394 SLITRK3O94933 977 aa24.89■■□□□ 1.58
SDC3-202ENST00000339394 P4HBP07237 508 aaKnown RBP24.89■■□□□ 1.58
SDC3-202ENST00000339394 STAT5BP51692 787 aa24.89■■□□□ 1.58
SDC3-202ENST00000339394 CYP4A11Q02928 519 aa24.89■■□□□ 1.58
SDC3-202ENST00000339394 CXCL17Q6UXB2 119 aa24.89■■□□□ 1.58
SDC3-202ENST00000339394 BANK1Q8NDB2 785 aa24.89■■□□□ 1.58
SDC3-202ENST00000339394 ERMNQ8TAM6 284 aa24.89■■□□□ 1.58
SDC3-202ENST00000339394 ABHD8Q96I13 439 aa24.89■■□□□ 1.58
SDC3-202ENST00000339394 DYDC2Q96IM9 177 aa24.89■■□□□ 1.58
SDC3-202ENST00000339394 MAFBQ9Y5Q3 323 aaPredicted RBP24.89■■□□□ 1.58
SDC3-202ENST00000339394 DOCK5Q9H7D0 1870 aa24.89■■□□□ 1.57
SDC3-202ENST00000339394 MOXD2PA6NHM9 499 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 ACLYP53396 1101 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 KRT79Q5XKE5 535 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 PLPPR4Q7Z2D5 763 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 ZNF579Q8NAF0 562 aaKnown RBP24.88■■□□□ 1.57
SDC3-202ENST00000339394 AFAP1L1Q8TED9 768 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 KAT2BQ92831 832 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 MMTAG2Q9BU76 263 aaKnown RBP24.88■■□□□ 1.57
SDC3-202ENST00000339394 SMARCAD1Q9H4L7 1026 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 DNAH12Q6ZR08 3092 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 KBTBD13C9JR72 458 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 H3BRB1 525 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 F2P00734 622 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 SPATA31C1P0DKV0 1188 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 MNX1P50219 401 aaPredicted RBP24.88■■□□□ 1.57
SDC3-202ENST00000339394 UGCGQ16739 394 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 FAM160B1Q5W0V3 765 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 HAUS3Q68CZ6 603 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 PDXDC2PQ6P474 469 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 USP49Q70CQ1 688 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 CATSPER3Q86XQ3 398 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 SNX29Q8TEQ0 813 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 EPSTI1Q96J88 318 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 MTG1Q9BT17 334 aaPredicted RBP24.88■■□□□ 1.57
SDC3-202ENST00000339394 TUT1Q9H6E5 874 aaKnown RBP24.88■■□□□ 1.57
SDC3-202ENST00000339394 STK24Q9Y6E0 443 aa24.88■■□□□ 1.57
SDC3-202ENST00000339394 MKI67P46013 3256 aaKnown RBP24.88■■□□□ 1.57
SDC3-202ENST00000339394 MED24O75448 989 aa24.87■■□□□ 1.57
SDC3-202ENST00000339394 RPA1P27694 616 aa24.87■■□□□ 1.57
SDC3-202ENST00000339394 UBA7P41226 1012 aa24.87■■□□□ 1.57
SDC3-202ENST00000339394 QARSP47897 775 aaKnown RBP24.87■■□□□ 1.57
SDC3-202ENST00000339394 CTTNQ14247 550 aaKnown RBP24.87■■□□□ 1.57
SDC3-202ENST00000339394 ADALQ6DHV7 355 aa24.87■■□□□ 1.57
SDC3-202ENST00000339394 TPH2Q8IWU9 490 aa24.87■■□□□ 1.57
SDC3-202ENST00000339394 SYMPKQ92797 1274 aaKnown RBP24.87■■□□□ 1.57
SDC3-202ENST00000339394 LXNQ9BS40 222 aa24.87■■□□□ 1.57
SDC3-202ENST00000339394 POLR3CQ9BUI4 534 aaPredicted RBP24.87■■□□□ 1.57
SDC3-202ENST00000339394 ERAP1Q9NZ08 941 aa24.87■■□□□ 1.57
SDC3-202ENST00000339394 WRAP73Q9P2S5 460 aaPredicted RBP24.87■■□□□ 1.57
SDC3-202ENST00000339394 ZNF215Q9UL58 517 aaPredicted RBP24.87■■□□□ 1.57
SDC3-202ENST00000339394 IGSF9BQ9UPX0 1349 aa24.86■■□□□ 1.57
SDC3-202ENST00000339394 ZNF862O60290 1169 aa24.86■■□□□ 1.57
SDC3-202ENST00000339394 ATP4AP20648 1035 aa24.86■■□□□ 1.57
SDC3-202ENST00000339394 PSMC5P62195 406 aa24.86■■□□□ 1.57
SDC3-202ENST00000339394 SHC4Q6S5L8 630 aa24.86■■□□□ 1.57
SDC3-202ENST00000339394 NEK9Q8TD19 979 aa24.86■■□□□ 1.57
SDC3-202ENST00000339394 ATP6V0A1Q93050 837 aa24.86■■□□□ 1.57
SDC3-202ENST00000339394 PHF24Q9UPV7 400 aa24.86■■□□□ 1.57
SDC3-202ENST00000339394 CAPN2P17655 700 aa24.85■■□□□ 1.57
SDC3-202ENST00000339394 MARK3P27448 753 aa24.85■■□□□ 1.57
SDC3-202ENST00000339394 CCT6AP40227 531 aaKnown RBP24.85■■□□□ 1.57
SDC3-202ENST00000339394 SLC26A2P50443 739 aa24.85■■□□□ 1.57
SDC3-202ENST00000339394 ECM1Q16610 540 aa24.85■■□□□ 1.57
SDC3-202ENST00000339394 TNS4Q8IZW8 715 aa24.85■■□□□ 1.57
SDC3-202ENST00000339394 ANKLE1Q8NAG6 615 aa24.85■■□□□ 1.57
SDC3-202ENST00000339394 RNPEPQ9H4A4 650 aa24.85■■□□□ 1.57
SDC3-202ENST00000339394 ZSWIM4Q9H7M6 989 aa24.85■■□□□ 1.57
SDC3-202ENST00000339394 TUFT1Q9NNX1 390 aa24.85■■□□□ 1.57
SDC3-202ENST00000339394 A0A1W2PQ45 241 aaPredicted RBP24.84■■□□□ 1.57
SDC3-202ENST00000339394 A0A1W2PQY0 241 aa24.84■■□□□ 1.57
SDC3-202ENST00000339394 CABYRO75952 493 aa24.84■■□□□ 1.57
SDC3-202ENST00000339394 CSPP1Q1MSJ5 1256 aa24.84■■□□□ 1.57
SDC3-202ENST00000339394 TRMT1LQ7Z2T5 733 aaKnown RBP24.84■■□□□ 1.57
SDC3-202ENST00000339394 CABP7Q86V35 215 aa24.84■■□□□ 1.57
SDC3-202ENST00000339394 GLT1D1Q96MS3 346 aa24.84■■□□□ 1.57
SDC3-202ENST00000339394 KATNAL1Q9BW62 490 aa24.84■■□□□ 1.57
SDC3-202ENST00000339394 CCSER1Q9C0I3 900 aa24.84■■□□□ 1.57
SDC3-202ENST00000339394 POTEB3A0JP26 581 aa24.84■■□□□ 1.57
SDC3-202ENST00000339394 HAS3O00219 553 aa24.84■■□□□ 1.57
SDC3-202ENST00000339394 EN2P19622 333 aaPredicted RBP24.84■■□□□ 1.57
SDC3-202ENST00000339394 CHMP4BP1P59074 171 aa24.84■■□□□ 1.57
SDC3-202ENST00000339394 ZRSR1Q15695 479 aaKnown RBP24.84■■□□□ 1.57
SDC3-202ENST00000339394 KIAA0753Q2KHM9 967 aa24.84■■□□□ 1.57
SDC3-202ENST00000339394 POTEBQ6S5H4 581 aa24.84■■□□□ 1.57
SDC3-202ENST00000339394 C4orf19Q8IY42 314 aa24.84■■□□□ 1.57
SDC3-202ENST00000339394 CKAP2LQ8IYA6 745 aa24.84■■□□□ 1.57
SDC3-202ENST00000339394 GBP4Q96PP9 640 aa24.84■■□□□ 1.57
SDC3-202ENST00000339394 PSEN2P49810 448 aa24.83■■□□□ 1.57
SDC3-202ENST00000339394 PSMC6P62333 389 aa24.83■■□□□ 1.57
SDC3-202ENST00000339394 PRKCEQ02156 737 aa24.83■■□□□ 1.57
SDC3-202ENST00000339394 MFSD10Q14728 455 aa24.83■■□□□ 1.57
SDC3-202ENST00000339394 PLCB4Q15147 1175 aa24.83■■□□□ 1.57
SDC3-202ENST00000339394 POTEGQ6S5H5 508 aa24.83■■□□□ 1.57
SDC3-202ENST00000339394 TMEM87AQ8NBN3 555 aa24.83■■□□□ 1.57
SDC3-202ENST00000339394 VTI1AQ96AJ9 217 aa24.83■■□□□ 1.57
SDC3-202ENST00000339394 KIAA0100Q14667 2235 aaKnown RBP24.82■■□□□ 1.56
SDC3-202ENST00000339394 DKC1O60832 514 aaKnown RBP eCLIP24.82■■□□□ 1.56
SDC3-202ENST00000339394 LYPLA2O95372 231 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms