RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 STXBP2Q15833 593 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 SPATA1Q5VX52 437 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 CNNM4Q6P4Q7 775 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 SEPT14Q6ZU15 432 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 PAXIP1Q6ZW49 1069 aaPredicted RBP4.61□□□□□ -1.67
MCF2-201ENST00000338585 ANKRD23Q86SG2 305 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 SAPCD2Q86UD0 394 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 NLRX1Q86UT6 975 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 RASAL3Q86YV0 1011 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 SYT2Q8N9I0 419 aaPredicted RBP4.61□□□□□ -1.67
MCF2-201ENST00000338585 DNERQ8NFT8 737 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 EEF2KMTQ96G04 330 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 ZNF830Q96NB3 372 aaPredicted RBP4.61□□□□□ -1.67
MCF2-201ENST00000338585 MMP19Q99542 508 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 REEP2Q9BRK0 252 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 XPO4Q9C0E2 1151 aaKnown RBP4.61□□□□□ -1.67
MCF2-201ENST00000338585 ZHX3Q9H4I2 956 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 TBC1D22BQ9NU19 505 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 PANK4Q9NVE7 773 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 DNAJC25-GNG10A0A024R161 153 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 PVALEFA0A1B0GWK0 134 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 IGF2BP3O00425 579 aaKnown RBP eCLIP4.61□□□□□ -1.67
MCF2-201ENST00000338585 KRT18P05783 430 aaKnown RBP4.61□□□□□ -1.67
MCF2-201ENST00000338585 PTMAP06454 111 aaKnown RBP4.61□□□□□ -1.67
MCF2-201ENST00000338585 PTGS1P23219 599 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 EDNRBP24530 442 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 TPM4P67936 248 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 GIT2Q14161 759 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 KCTD2Q14681 263 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 CCDC144BQ3MJ40 725 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 CDKAL1Q5VV42 579 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 RINT1Q6NUQ1 792 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 GPRC5AQ8NFJ5 357 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 TRIM44Q96DX7 344 aaPredicted RBP4.61□□□□□ -1.67
MCF2-201ENST00000338585 NAP1L5Q96NT1 182 aaPredicted RBP4.61□□□□□ -1.67
MCF2-201ENST00000338585 IWS1Q96ST2 819 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 MROH8Q9H579 483 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 INTS13Q9NVM9 706 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 RWDD2AQ9UIY3 292 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 SLC45A1Q9Y2W3 748 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 PASKQ96RG2 1323 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 LRRC37A2A6NM11 1700 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 SFI1A8K8P3 1242 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 WDR64B1ANS9 1081 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 KIF3CO14782 793 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 PSMA7O14818 248 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 MCM3APO60318 1980 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 EIF3JO75822 258 aaKnown RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 SERPINC1P01008 464 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 CASP5P51878 434 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 HERC4Q5GLZ8 1057 aaPredicted RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 FAM26FQ5R3K3 315 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 TMEM63BQ5T3F8 832 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 UTP14CQ5TAP6 766 aaKnown RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 ANKRD40Q6AI12 368 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 TTI2Q6NXR4 508 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 C1orf186Q6ZWK4 172 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 SFR1Q86XK3 245 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 DRC7Q8IY82 874 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 CCDC47Q96A33 483 aaKnown RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 MRFAP1L1Q96HT8 127 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 DUSP9Q99956 384 aaKnown RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 LRRC27Q9C0I9 530 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 MAF1Q9H063 256 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 SEMA6BQ9H3T3 888 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 GPBP1L1Q9HC44 474 aaPredicted RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 BMP2KQ9NSY1 1161 aaPredicted RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 CPA4Q9UI42 421 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 PCDHA2Q9Y5H9 948 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 STK24Q9Y6E0 443 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 FRMD3A2A2Y4 597 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 NKRFO15226 690 aaKnown RBP eCLIP4.6□□□□□ -1.67
MCF2-201ENST00000338585 MAFGO15525 162 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 ZNF862O60290 1169 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 STAM2O75886 525 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 ARIH2O95376 493 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 P4HBP07237 508 aaKnown RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 CDK11BP21127 795 aaKnown RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 UBA1P22314 1058 aaKnown RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 ADORA2AP29274 412 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 QARSP47897 775 aaKnown RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 JAK3P52333 1124 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 UBASH3AP57075 661 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 ACTR2P61160 394 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 KRT76Q01546 638 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 GRM1Q13255 1194 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 ARID5BQ14865 1188 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 TPD52L1Q16890 204 aaPredicted RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 GNPTABQ3T906 1256 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 CT47A1Q5JQC4 288 aaPredicted RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 PLA2G4FQ68DD2 849 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 RGMBQ6NW40 437 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.6□□□□□ -1.67
MCF2-201ENST00000338585 CYFIP1Q7L576 1253 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 MAEAQ7L5Y9 396 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 APTXQ7Z2E3 356 aaKnown RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 IRF2BP1Q8IU81 584 aa4.6□□□□□ -1.67
MCF2-201ENST00000338585 CCDC60Q8IWA6 550 aaPredicted RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 FBXO16Q8IX29 292 aaPredicted RBP4.6□□□□□ -1.67
MCF2-201ENST00000338585 CCDC65Q8IXS2 484 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms