RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CCDC155Q8N6L0 562 aa17.94■□□□□ 0.46
CLN3-201ENST00000333496 LLPHQ9BRT6 129 aaKnown RBP17.94■□□□□ 0.46
CLN3-201ENST00000333496 NRCAMQ92823 1304 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 CCDC194A0A1B0GVG4 234 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 FAM205CA6NFA0 338 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 SLC34A2O95436 690 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 FGBP02675 491 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 MMP1P03956 469 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 SELPP16109 830 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 STAT5BP51692 787 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 ZNF618Q5T7W0 954 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 KRT40Q6A162 431 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 MOXD1Q6UVY6 613 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 PIK3AP1Q6ZUJ8 805 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 LRRC8DQ7L1W4 858 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 PLPPR4Q7Z2D5 763 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 CCDC60Q8IWA6 550 aaPredicted RBP17.93■□□□□ 0.46
CLN3-201ENST00000333496 RPUSD2Q8IZ73 545 aaKnown RBP17.93■□□□□ 0.46
CLN3-201ENST00000333496 HERVK_113Q902F9 699 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 SLC5A5Q92911 643 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 AZI2Q9H6S1 392 aa17.93■□□□□ 0.46
CLN3-201ENST00000333496 CXXC1Q9P0U4 656 aaPredicted RBP17.93■□□□□ 0.46
CLN3-201ENST00000333496 GNAT1P11488 350 aa17.92■□□□□ 0.46
CLN3-201ENST00000333496 KRT2P35908 639 aa17.92■□□□□ 0.46
CLN3-201ENST00000333496 PLCB4Q15147 1175 aa17.92■□□□□ 0.46
CLN3-201ENST00000333496 MARCH8Q5T0T0 291 aa17.92■□□□□ 0.46
CLN3-201ENST00000333496 ZNF746Q6NUN9 644 aaPredicted RBP17.92■□□□□ 0.46
CLN3-201ENST00000333496 OTOP2Q7RTS6 562 aa17.92■□□□□ 0.46
CLN3-201ENST00000333496 BTBD18B2RXH4 712 aa17.91■□□□□ 0.46
CLN3-201ENST00000333496 SLC37A4O43826 429 aa17.91■□□□□ 0.46
CLN3-201ENST00000333496 ST18O60284 1047 aa17.91■□□□□ 0.46
CLN3-201ENST00000333496 PFKMP08237 780 aa17.91■□□□□ 0.46
CLN3-201ENST00000333496 ATP4AP20648 1035 aa17.91■□□□□ 0.46
CLN3-201ENST00000333496 RFC2P35250 354 aa17.91■□□□□ 0.46
CLN3-201ENST00000333496 KRT76Q01546 638 aa17.91■□□□□ 0.46
CLN3-201ENST00000333496 PPFIA1Q13136 1202 aa17.91■□□□□ 0.46
CLN3-201ENST00000333496 MBTPS1Q14703 1052 aa17.91■□□□□ 0.46
CLN3-201ENST00000333496 GRIK4Q16099 956 aa17.91■□□□□ 0.46
CLN3-201ENST00000333496 LETM2Q2VYF4 491 aa17.91■□□□□ 0.46
CLN3-201ENST00000333496 FAM109BQ6ICB4 259 aaPredicted RBP17.91■□□□□ 0.46
CLN3-201ENST00000333496 GPR153Q6NV75 609 aa17.91■□□□□ 0.46
CLN3-201ENST00000333496 NEK8Q86SG6 692 aa17.91■□□□□ 0.46
CLN3-201ENST00000333496 ETNPPLQ8TBG4 499 aa17.91■□□□□ 0.46
CLN3-201ENST00000333496 RIT2Q99578 217 aa17.91■□□□□ 0.46
CLN3-201ENST00000333496 NBNO60934 754 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 PSMD10O75832 226 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 INSRRP14616 1297 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 SWSAP1Q6NVH7 229 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 SMAP1Q8IYB5 467 aaPredicted RBP17.9■□□□□ 0.46
CLN3-201ENST00000333496 DIS3L2Q8IYB7 885 aaKnown RBP17.9■□□□□ 0.46
CLN3-201ENST00000333496 DDX25Q9UHL0 483 aaKnown RBP17.9■□□□□ 0.46
CLN3-201ENST00000333496 MICAL3Q7RTP6 2002 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 MBLAC1A4D2B0 266 aaPredicted RBP17.9■□□□□ 0.46
CLN3-201ENST00000333496 BACH1O14867 736 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 THPOP40225 353 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 SMAD3P84022 425 aaKnown RBP17.9■□□□□ 0.46
CLN3-201ENST00000333496 GUCY1B3Q02153 619 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 LRCH2Q5VUJ6 765 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 PPP4R3AQ6IN85 833 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 MIS18BP1Q6P0N0 1132 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 B3GNT9Q6UX72 402 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 RUFY4Q6ZNE9 571 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 ZBTB10Q96DT7 871 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 UNC45AQ9H3U1 944 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 ZNF302Q9NR11 478 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 PCDHA10Q9Y5I2 948 aa17.9■□□□□ 0.46
CLN3-201ENST00000333496 MAFBQ9Y5Q3 323 aaPredicted RBP17.9■□□□□ 0.46
CLN3-201ENST00000333496 COL6A3P12111 3177 aa17.89■□□□□ 0.46
CLN3-201ENST00000333496 POTEB3A0JP26 581 aa17.89■□□□□ 0.45
CLN3-201ENST00000333496 GAS7O60861 476 aa17.89■□□□□ 0.45
CLN3-201ENST00000333496 CXCL10P02778 98 aa17.89■□□□□ 0.45
CLN3-201ENST00000333496 ANP32AP39687 249 aaKnown RBP17.89■□□□□ 0.45
CLN3-201ENST00000333496 SLC26A2P50443 739 aa17.89■□□□□ 0.45
CLN3-201ENST00000333496 IGBP1P78318 339 aa17.89■□□□□ 0.45
CLN3-201ENST00000333496 HMGN5P82970 282 aaKnown RBP17.89■□□□□ 0.45
CLN3-201ENST00000333496 TRIM29Q14134 588 aa17.89■□□□□ 0.45
CLN3-201ENST00000333496 POTEBQ6S5H4 581 aa17.89■□□□□ 0.45
CLN3-201ENST00000333496 IL27Q8NEV9 243 aa17.89■□□□□ 0.45
CLN3-201ENST00000333496 TRAPPC12Q8WVT3 735 aa17.89■□□□□ 0.45
CLN3-201ENST00000333496 TMX3Q96JJ7 454 aa17.89■□□□□ 0.45
CLN3-201ENST00000333496 TEKT3Q9BXF9 490 aa17.89■□□□□ 0.45
CLN3-201ENST00000333496 OSBPL7Q9BZF2 842 aa17.89■□□□□ 0.45
CLN3-201ENST00000333496 BRMS1Q9HCU9 246 aa17.89■□□□□ 0.45
CLN3-201ENST00000333496 TUBE1Q9UJT0 475 aa17.89■□□□□ 0.45
CLN3-201ENST00000333496 TRPC6Q9Y210 931 aa17.89■□□□□ 0.45
CLN3-201ENST00000333496 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.88■□□□□ 0.45
CLN3-201ENST00000333496 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.88■□□□□ 0.45
CLN3-201ENST00000333496 GRXCR1A8MXD5 290 aa17.88■□□□□ 0.45
CLN3-201ENST00000333496 CCNT1O60563 726 aaKnown RBP17.88■□□□□ 0.45
CLN3-201ENST00000333496 PARNO95453 639 aaKnown RBP17.88■□□□□ 0.45
CLN3-201ENST00000333496 TCTN1Q2MV58 587 aa17.88■□□□□ 0.45
CLN3-201ENST00000333496 FAM160B1Q5W0V3 765 aa17.88■□□□□ 0.45
CLN3-201ENST00000333496 PDXDC2PQ6P474 469 aa17.88■□□□□ 0.45
CLN3-201ENST00000333496 Q7L0L9 218 aa17.88■□□□□ 0.45
CLN3-201ENST00000333496 C8orf76Q96K31 380 aa17.88■□□□□ 0.45
CLN3-201ENST00000333496 KCNMB3Q9NPA1 279 aa17.88■□□□□ 0.45
CLN3-201ENST00000333496 DISC1Q9NRI5 854 aa17.88■□□□□ 0.45
CLN3-201ENST00000333496 RRN3P2A6NIE6 340 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 WDR64B1ANS9 1081 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 RSPH10B2B2RC85 870 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms