RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 SAT1P21673 171 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 KIF23Q02241 960 aaPredicted RBP15.3■□□□□ 0.04
COL7A1-201ENST00000328333 TRIM67Q6ZTA4 783 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 CHURC1Q8WUH1 139 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 TRIM8Q9BZR9 551 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 EML4Q9HC35 981 aaKnown RBP15.3■□□□□ 0.04
COL7A1-201ENST00000328333 STRIP2Q9ULQ0 834 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 RNF103-CHMP3A0A140T963 221 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 SPDYE16A6NNV3 312 aaPredicted RBP15.3■□□□□ 0.04
COL7A1-201ENST00000328333 INPP5AQ14642 412 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 SPDYE2Q495Y8 402 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 DNAJC24Q6P3W2 148 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 P2RX5Q93086 422 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 YIPF3Q9GZM5 350 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 EHD2Q9NZN4 543 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 TMED8Q6PL24 325 aaPredicted RBP15.3■□□□□ 0.04
COL7A1-201ENST00000328333 PBXIP1Q96AQ6 731 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 DAB2P98082 770 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 SURF1Q15526 300 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 DNAL1Q4LDG9 190 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 MAGEB5Q9BZ81 275 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 ABCC4O15439 1325 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 IQCA1LA6NCM1 817 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 SEC31AO94979 1220 aaKnown RBP15.3■□□□□ 0.04
COL7A1-201ENST00000328333 CC2D1AQ6P1N0 951 aaPredicted RBP15.3■□□□□ 0.04
COL7A1-201ENST00000328333 TUBGCP3Q96CW5 907 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 THAP11Q96EK4 314 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 HSPA1AP0DMV8 641 aaKnown RBP15.3■□□□□ 0.04
COL7A1-201ENST00000328333 HSPA1BP0DMV9 641 aaKnown RBP15.3■□□□□ 0.04
COL7A1-201ENST00000328333 KIF19Q2TAC6 998 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 AGGF1Q8N302 714 aaeCLIP15.3■□□□□ 0.04
COL7A1-201ENST00000328333 ZNF555Q8NEP9 628 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 C19orf60Q96EN9 201 aa15.3■□□□□ 0.04
COL7A1-201ENST00000328333 HNRNPDLO14979 420 aaKnown RBP15.29■□□□□ 0.04
COL7A1-201ENST00000328333 TFDP1Q14186 410 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 HP1BP3Q5SSJ5 553 aaPredicted RBP15.29■□□□□ 0.04
COL7A1-201ENST00000328333 EPS8L2Q9H6S3 715 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 STMN3Q9NZ72 180 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 NFU1Q9UMS0 254 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 ACSL3O95573 720 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 KAZNQ674X7 775 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 C2orf54Q08AI8 447 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 TNFAIP1Q13829 316 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 CRYMQ14894 314 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 AASDHQ4L235 1098 aaPredicted RBP15.29■□□□□ 0.04
COL7A1-201ENST00000328333 RFX6Q8HWS3 928 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 KDM4CQ9H3R0 1056 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 ITKQ08881 620 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 IFRD2Q12894 506 aaPredicted RBP15.29■□□□□ 0.04
COL7A1-201ENST00000328333 PCDHA13Q9Y5I0 950 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 ZBED4O75132 1171 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 WDR47O94967 919 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 SP4Q02446 784 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 RBL2Q08999 1139 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 PTGDRQ13258 359 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 KRT87PA6NCN2 255 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 AARSP49588 968 aaKnown RBP eCLIP15.29■□□□□ 0.04
COL7A1-201ENST00000328333 NELFCDQ8IXH7 590 aa15.29■□□□□ 0.04
COL7A1-201ENST00000328333 SMG5Q9UPR3 1016 aaKnown RBP15.29■□□□□ 0.04
COL7A1-201ENST00000328333 USP28Q96RU2 1077 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 CYTH2Q99418 400 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 SLITRK6Q9H5Y7 841 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 ETNK1Q9HBU6 452 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 ZNF711Q9Y462 761 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 A0A1W2PP64 1363 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 RASSF9O75901 435 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 EIF4A2Q14240 407 aaKnown RBP15.28■□□□□ 0.04
COL7A1-201ENST00000328333 MESDQ14696 234 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 HAUS5O94927 633 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 GGCXP38435 758 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 TBK1Q9UHD2 729 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 COPS2P61201 443 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 PPARAQ07869 468 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 ADRM1Q16186 407 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 ITGA6P23229 1130 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 CHRNA3P32297 505 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 PAPOLAP51003 745 aaKnown RBP15.28■□□□□ 0.04
COL7A1-201ENST00000328333 FAM227BQ96M60 508 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 KIAA0556O60303 1618 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 PRPSAP2O60256 369 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 CALB1P05937 261 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 IL2RBP14784 551 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 RUNX1T1Q06455 604 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 SF3A3Q12874 501 aaKnown RBP eCLIP15.28■□□□□ 0.043e-6■■■■■ 44.5
COL7A1-201ENST00000328333 FANCBQ8NB91 859 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 ANKRD36BP1Q96IX9 119 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 SYBUQ9NX95 663 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 PFASO15067 1338 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 KRT1P04264 644 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 DARS2Q6PI48 645 aaKnown RBP15.28■□□□□ 0.04
COL7A1-201ENST00000328333 MED10Q9BTT4 135 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 ABCB6Q9NP58 842 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 STRNO43815 780 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 JAK2O60674 1132 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 NLRP11P59045 1033 aaKnown RBP15.28■□□□□ 0.04
COL7A1-201ENST00000328333 BASP1P80723 227 aaKnown RBP15.28■□□□□ 0.04
COL7A1-201ENST00000328333 CDR2LQ86X02 465 aaPredicted RBP15.28■□□□□ 0.04
COL7A1-201ENST00000328333 ALKBH8Q96BT7 664 aaKnown RBP15.28■□□□□ 0.04
COL7A1-201ENST00000328333 EPAS1Q99814 870 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 NOVA2Q9UNW9 492 aaKnown RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms