RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TBC1D32Q96NH3 1257 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 SAMSN1Q9NSI8 373 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 CACNA2D2Q9NY47 1150 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 EFR3BQ9Y2G0 817 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 L3MBTL1Q9Y468 752 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 IVNS1ABPQ9Y6Y0 642 aa8.19□□□□□ -1.1
LIMCH1-201ENST00000313860 CHUKO15111 745 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 CSNK2BP67870 215 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 RAB3GAP1Q15042 981 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 RD3Q7Z3Z2 195 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 EXD1Q8NHP7 514 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 GDAP1Q8TB36 358 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 NAPGQ99747 312 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 DNAJC25Q9H1X3 360 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 PCYT1BQ9Y5K3 369 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 SETD5Q9C0A6 1442 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 CCDC7Q96M83 1385 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 A0A087WZG4 1122 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 IQCMA0A1B0GVH7 501 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 KPNA3O00505 521 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 CCDC130P13994 396 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 ATP6V1C1P21283 382 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 PTGS2P35354 604 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 CCT2P78371 535 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 FASTKD1Q53R41 847 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 ICA1LQ8NDH6 482 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 JDP2Q8WYK2 163 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 RSPH1Q8WYR4 309 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 MRPS27Q92552 414 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 USP7Q93009 1102 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 ZC3H10Q96K80 434 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 ANKIB1Q9P2G1 1089 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 ARL2BPQ9Y2Y0 163 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 AKNAQ7Z591 1439 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 CFAP99D6REC4 459 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 POC1B-GALNT4F8VUJ3 575 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 SERPINA3P01011 423 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 P4HA1P13674 534 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 SSFA2P28290 1259 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 STAT6P42226 847 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 CAV3P56539 151 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 PMPCAQ10713 525 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 KCTD16Q68DU8 428 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 TRIM67Q6ZTA4 783 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 RRM2BQ7LG56 351 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 RYBPQ8N488 228 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 ZBTB10Q96DT7 871 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 FAM161BQ96MY7 647 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 FHOD1Q9Y613 1164 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 ASNA1O43681 348 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 TNFAIP3P21580 790 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 UBA7P41226 1012 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 STARP49675 285 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 PAK2Q13177 524 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 BIKQ13323 160 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 IDI1Q13907 227 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 PRPSAP1Q14558 356 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 PLA2G4EQ3MJ16 856 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 HIBCHQ6NVY1 386 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 CITED2Q99967 270 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 POLG2Q9UHN1 485 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 L1RE1Q9UN81 338 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 KRT33BQ14525 404 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 AADACL4Q5VUY2 407 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 CLHC1Q8NHS4 586 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 BACH2Q9BYV9 841 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 TSPYL4Q9UJ04 414 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 ANAPC5Q9UJX4 755 aa8.18□□□□□ -1.1
LIMCH1-201ENST00000313860 PRPF6O94906 941 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 LAMB3Q13751 1172 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 GPR139Q6DWJ6 353 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 FAM45AQ8TCE6 357 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 ARHGAP45Q92619 1136 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 RUNDC3BQ96NL0 473 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 PRPF18Q99633 342 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 KRT23Q9C075 422 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 VIPAS39Q9H9C1 493 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 CYLDQ9NQC7 956 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 HAUS2Q9NVX0 235 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 MLXQ9UH92 298 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 RPS6KA6Q9UK32 745 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 PADI4Q9UM07 663 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 TTF2Q9UNY4 1162 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 A6NJR5 290 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 PSIP1O75475 530 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 ABL1P00519 1130 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 CALB1P05937 261 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 CD53P19397 219 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 GARTP22102 1010 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 SOX11P35716 441 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 VBP1P61758 197 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 TUBB4BP68371 445 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 KCTD21Q4G0X4 260 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 PPP1R42Q7Z4L9 355 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 STAMQ92783 540 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 GTPBP3Q969Y2 492 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 VMP1Q96GC9 406 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 CCNL2Q96S94 520 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 FBRSL1Q9HCM7 1045 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 TMEM161AQ9NX61 479 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms