RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 DHX36Q9H2U1 1008 aaKnown RBP26.78■■□□□ 1.88
SPTSSA-201ENST00000298130 CETN3O15182 167 aa26.78■■□□□ 1.88
SPTSSA-201ENST00000298130 RAD51CO43502 376 aa26.78■■□□□ 1.88
SPTSSA-201ENST00000298130 POLD1P28340 1107 aa26.78■■□□□ 1.88
SPTSSA-201ENST00000298130 HOXA13P31271 388 aaPredicted RBP26.78■■□□□ 1.88
SPTSSA-201ENST00000298130 HOXD13P35453 343 aa26.78■■□□□ 1.88
SPTSSA-201ENST00000298130 SLC12A3P55017 1021 aa26.78■■□□□ 1.88
SPTSSA-201ENST00000298130 EMBQ6PCB8 327 aa26.78■■□□□ 1.88
SPTSSA-201ENST00000298130 REEP2Q9BRK0 252 aa26.78■■□□□ 1.88
SPTSSA-201ENST00000298130 IKQ13123 557 aaPredicted RBP26.77■■□□□ 1.88
SPTSSA-201ENST00000298130 MEI1Q5TIA1 1274 aa26.77■■□□□ 1.88
SPTSSA-201ENST00000298130 IFT20Q8IY31 132 aa26.77■■□□□ 1.88
SPTSSA-201ENST00000298130 CEP63Q96MT8 703 aa26.77■■□□□ 1.88
SPTSSA-201ENST00000298130 SH3GL2Q99962 352 aa26.77■■□□□ 1.88
SPTSSA-201ENST00000298130 BBOX1O75936 387 aa26.77■■□□□ 1.88
SPTSSA-201ENST00000298130 PPFIA1Q13136 1202 aa26.77■■□□□ 1.88
SPTSSA-201ENST00000298130 RBM46Q8TBY0 533 aaKnown RBP26.77■■□□□ 1.88
SPTSSA-201ENST00000298130 TSPYL1Q9H0U9 437 aa26.77■■□□□ 1.88
SPTSSA-201ENST00000298130 CENPHQ9H3R5 247 aa26.77■■□□□ 1.88
SPTSSA-201ENST00000298130 USP21Q9UK80 565 aa26.77■■□□□ 1.88
SPTSSA-201ENST00000298130 GRIN2DO15399 1336 aa26.77■■□□□ 1.88
SPTSSA-201ENST00000298130 ZNF233A6NK53 670 aa26.76■■□□□ 1.87
SPTSSA-201ENST00000298130 NNTQ13423 1086 aa26.76■■□□□ 1.87
SPTSSA-201ENST00000298130 EDEM3Q9BZQ6 932 aa26.76■■□□□ 1.87
SPTSSA-201ENST00000298130 KDM3AQ9Y4C1 1321 aa26.76■■□□□ 1.87
SPTSSA-201ENST00000298130 PLIN4Q96Q06 1357 aa26.76■■□□□ 1.87
SPTSSA-201ENST00000298130 SHOX2O60902 331 aaPredicted RBP26.76■■□□□ 1.87
SPTSSA-201ENST00000298130 GDF11O95390 407 aa26.76■■□□□ 1.87
SPTSSA-201ENST00000298130 GIT2Q14161 759 aa26.76■■□□□ 1.87
SPTSSA-201ENST00000298130 PACS2Q86VP3 889 aa26.76■■□□□ 1.87
SPTSSA-201ENST00000298130 KSR1Q8IVT5 923 aa26.76■■□□□ 1.87
SPTSSA-201ENST00000298130 CERKQ8TCT0 537 aa26.76■■□□□ 1.87
SPTSSA-201ENST00000298130 ZC3H12CQ9C0D7 883 aaKnown RBP26.76■■□□□ 1.87
SPTSSA-201ENST00000298130 KCNMB3Q9NPA1 279 aa26.76■■□□□ 1.87
SPTSSA-201ENST00000298130 AKAP3O75969 853 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 GPATCH4Q5T3I0 446 aaKnown RBP26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 CFAP58Q5T655 872 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 INPP4AQ96PE3 977 aaPredicted RBP26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 RGL1Q9NZL6 768 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 PCDHB13Q9Y5F0 798 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 FAM86B1E9PN63 330 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 MEIS2O14770 477 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 FAM86B2P0C5J1 330 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 UCHL3P15374 230 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 IRF2BP2Q7Z5L9 587 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 ARMCX3Q9UH62 379 aaPredicted RBP26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 GOLGA8KD6RF30 607 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 CEP104O60308 925 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 OPA1O60313 960 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 ARHGAP4P98171 946 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 HLTFQ14527 1009 aaKnown RBP eCLIP26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 SLFN13Q68D06 897 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 PPP1R18Q6NYC8 613 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 KIAA0825Q8IV33 1275 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 GDF3Q9NR23 364 aa26.75■■□□□ 1.87
SPTSSA-201ENST00000298130 TULP1O00294 542 aaPredicted RBP26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 PPEF1O14829 653 aaPredicted RBP26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 ZBTB39O15060 712 aa26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 CORO7P57737 925 aa26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 SEPT2Q15019 361 aa26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 HYIQ5T013 277 aa26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 APOBEC3HQ6NTF7 200 aaKnown RBP26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 OR2W6PQ8NHA6 318 aa26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 BHMT2Q9H2M3 363 aa26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 DBNDD1Q9H9R9 158 aa26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 PCDHGC5Q9Y5F6 944 aa26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 DDTLA6NHG4 134 aaPredicted RBP26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 TMCO5BA8MYB1 307 aa26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 GCFC2P16383 781 aaKnown RBP26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 RBM5P52756 815 aaKnown RBP eCLIP26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 GUCY1A3Q02108 690 aa26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 PIGOQ8TEQ8 1089 aa26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 AIPL1Q9NZN9 384 aa26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 BCS1LQ9Y276 419 aa26.74■■□□□ 1.87
SPTSSA-201ENST00000298130 SPATA31C1P0DKV0 1188 aa26.73■■□□□ 1.87
SPTSSA-201ENST00000298130 PIK3R5Q8WYR1 880 aa26.73■■□□□ 1.87
SPTSSA-201ENST00000298130 SYN2Q92777 582 aaPredicted RBP26.73■■□□□ 1.87
SPTSSA-201ENST00000298130 CAVIN3Q969G5 261 aa26.73■■□□□ 1.87
SPTSSA-201ENST00000298130 G3V3G9 751 aa26.73■■□□□ 1.87
SPTSSA-201ENST00000298130 EIF3HO15372 352 aaKnown RBP eCLIP26.73■■□□□ 1.87
SPTSSA-201ENST00000298130 GNA14O95837 355 aa26.73■■□□□ 1.87
SPTSSA-201ENST00000298130 HLA-DOAP06340 250 aa26.73■■□□□ 1.87
SPTSSA-201ENST00000298130 PON1P27169 355 aa26.73■■□□□ 1.87
SPTSSA-201ENST00000298130 DCAF8Q5TAQ9 597 aa26.73■■□□□ 1.87
SPTSSA-201ENST00000298130 SAMD1Q6SPF0 538 aaPredicted RBP26.73■■□□□ 1.87
SPTSSA-201ENST00000298130 RUSC1Q9BVN2 902 aa26.73■■□□□ 1.87
SPTSSA-201ENST00000298130 NUCKS1Q9H1E3 243 aaKnown RBP26.73■■□□□ 1.87
SPTSSA-201ENST00000298130 LUC7LQ9NQ29 371 aaKnown RBP26.73■■□□□ 1.87
SPTSSA-201ENST00000298130 LIG3P49916 1009 aa26.72■■□□□ 1.87
SPTSSA-201ENST00000298130 SPIRE1Q08AE8 756 aa26.72■■□□□ 1.87
SPTSSA-201ENST00000298130 RPS6KA1Q15418 735 aa26.72■■□□□ 1.87
SPTSSA-201ENST00000298130 EXOC3L4Q17RC7 722 aa26.72■■□□□ 1.87
SPTSSA-201ENST00000298130 SPICE1Q8N0Z3 855 aa26.72■■□□□ 1.87
SPTSSA-201ENST00000298130 GCNT3O95395 438 aa26.72■■□□□ 1.87
SPTSSA-201ENST00000298130 MAGEA9P43362 315 aa26.72■■□□□ 1.87
SPTSSA-201ENST00000298130 USP38Q8NB14 1042 aa26.72■■□□□ 1.87
SPTSSA-201ENST00000298130 TAF4BQ92750 862 aa26.72■■□□□ 1.87
SPTSSA-201ENST00000298130 RNPC3Q96LT9 517 aaKnown RBP26.72■■□□□ 1.87
SPTSSA-201ENST00000298130 DDX47Q9H0S4 455 aaKnown RBP26.72■■□□□ 1.87
SPTSSA-201ENST00000298130 CHMP2AO43633 222 aa26.71■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms