RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 DBF4Q9UBU7 674 aaPredicted RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 SLFN14P0C7P3 912 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 ATP1A2P50993 1020 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 AK8Q96MA6 479 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 DACH2Q96NX9 599 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 CRNKL1Q9BZJ0 848 aaKnown RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 SENP3-EIF4A1A0A087X0R7 540 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 KRT17Q04695 432 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 RMND5BQ96G75 393 aaPredicted RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 UBE2OQ9C0C9 1292 aaKnown RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 KAT14Q9H8E8 782 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 OLFML3Q9NRN5 406 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 CENPXA8MT69 81 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 ALOX5P09917 674 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 IL12RB1P42701 662 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 ITIH4Q14624 930 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 CDC37Q16543 378 aaPredicted RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 C8orf34Q49A92 452 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 PLD3Q8IV08 490 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 MRPL48Q96GC5 212 aaKnown RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 ZMYND12Q9H0C1 365 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 BABAM1Q9NWV8 329 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 CCDC59Q9P031 241 aaKnown RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 CAPN11Q9UMQ6 739 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 PRG3Q9Y2Y8 225 aaPredicted RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 TDRD15B5MCY1 1934 aaKnown RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 SMCO2A6NFE2 343 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 TK2O00142 265 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 LCA5LO95447 670 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 SNX17Q15036 470 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 RCN1Q15293 331 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 UAP1Q16222 522 aaPredicted RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 FAM45BPQ6NSW5 357 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 ARHGAP27Q6ZUM4 889 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 PDIK1LQ8N165 341 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 PDCD10Q9BUL8 212 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 KLHL20Q9Y2M5 609 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 PPIP5K1Q6PFW1 1433 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 DEXIO95424 95 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 NUP62P37198 522 aaPredicted RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 DNAJC9Q8WXX5 260 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 CBX8Q9HC52 389 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 SUCLA2Q9P2R7 463 aaPredicted RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 TSPOAP1O95153 1857 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 PLXNB1O43157 2135 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 TNFAIP3P21580 790 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 PPP2R2AP63151 447 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 TRMT5Q32P41 509 aaKnown RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 TIMM50Q3ZCQ8 353 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 CLEC17AQ6ZS10 378 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 PHF21AQ96BD5 680 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 TEX13AQ9BXU3 409 aaPredicted RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 AASDHPPTQ9NRN7 309 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 SLC52A1Q9NWF4 448 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 TUBGCP4Q9UGJ1 667 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 SH3GLB1Q9Y371 365 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 A8MXQ7 604 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 SESN2P58004 480 aaPredicted RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 RNASE9P60153 205 aaKnown RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 KLHL30Q0D2K2 578 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 ZCWPW2Q504Y3 356 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 YTHDF3Q7Z739 585 aaKnown RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 PIK3C3Q8NEB9 887 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 PACSIN1Q9BY11 444 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 CFAP74Q9C0B2 1584 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 PIK3R2O00459 728 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 GNB5O14775 395 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 P4HA2O15460 535 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 XPAP23025 273 aaPredicted RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 ITGA1P56199 1179 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 DCUN1D2Q6PH85 259 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 BNIPLQ7Z465 357 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 LRRC39Q96DD0 335 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 TRIM56Q9BRZ2 755 aaKnown RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 MOV10Q9HCE1 1003 aaKnown RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 COL6A6A6NMZ7 2263 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 TRAPPC8Q9Y2L5 1435 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 STARD3NLO95772 234 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 IFIT5Q13325 482 aaKnown RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 HADHQ16836 314 aaKnown RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 IFIT1BQ5T764 474 aaKnown RBP5.19□□□□□ -1.58
CSMD3-201ENST00000297405 C1orf146Q5VVC0 180 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 PLEKHM3Q6ZWE6 761 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 COG1Q8WTW3 980 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 S100ZQ8WXG8 99 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 OTUD5Q96G74 571 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 NLRP4Q96MN2 994 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 SLC4A7Q9Y6M7 1214 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 IQGAP2Q13576 1575 aa5.19□□□□□ -1.58
CSMD3-201ENST00000297405 SF3B1O75533 1304 aaKnown RBP eCLIP5.18□□□□□ -1.58
CSMD3-201ENST00000297405 MAFGO15525 162 aa5.18□□□□□ -1.58
CSMD3-201ENST00000297405 TBC1D4O60343 1298 aa5.18□□□□□ -1.58
CSMD3-201ENST00000297405 PRKAR2BP31323 418 aa5.18□□□□□ -1.58
CSMD3-201ENST00000297405 TRAPPC10P48553 1259 aa5.18□□□□□ -1.58
CSMD3-201ENST00000297405 PDAP1Q13442 181 aaKnown RBP5.18□□□□□ -1.58
CSMD3-201ENST00000297405 E2F5Q15329 346 aa5.18□□□□□ -1.58
CSMD3-201ENST00000297405 AKNAD1Q5T1N1 836 aa5.18□□□□□ -1.58
CSMD3-201ENST00000297405 TMEM87AQ8NBN3 555 aa5.18□□□□□ -1.58
CSMD3-201ENST00000297405 TEKT4Q8WW24 435 aa5.18□□□□□ -1.58
CSMD3-201ENST00000297405 NRBP1Q9UHY1 535 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms