RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 NOC2LQ9Y3T9 749 aaKnown RBP30.09■■■□□ 2.41
CBX4-201ENST00000269397 GNA14O95837 355 aa30.08■■■□□ 2.41
CBX4-201ENST00000269397 SPATS2Q86XZ4 545 aaKnown RBP30.08■■■□□ 2.41
CBX4-201ENST00000269397 CYFIP2Q96F07 1278 aa30.08■■■□□ 2.41
CBX4-201ENST00000269397 ATXN2Q99700 1313 aaKnown RBP30.08■■■□□ 2.41
CBX4-201ENST00000269397 DAPK3O43293 454 aa30.08■■■□□ 2.41
CBX4-201ENST00000269397 PICALMQ13492 652 aa30.08■■■□□ 2.41
CBX4-201ENST00000269397 ALKBH5Q6P6C2 394 aaKnown RBP30.08■■■□□ 2.41
CBX4-201ENST00000269397 ADGRF4Q8IZF3 695 aa30.08■■■□□ 2.41
CBX4-201ENST00000269397 JMJD4Q9H9V9 463 aa30.08■■■□□ 2.41
CBX4-201ENST00000269397 LRRC4CQ9HCJ2 640 aa30.08■■■□□ 2.41
CBX4-201ENST00000269397 NAGPAQ9UK23 515 aa30.08■■■□□ 2.41
CBX4-201ENST00000269397 DCDC2CA8MYV0 355 aa30.07■■■□□ 2.4
CBX4-201ENST00000269397 UCHL3P15374 230 aa30.07■■■□□ 2.4
CBX4-201ENST00000269397 PPP4R3AQ6IN85 833 aa30.07■■■□□ 2.4
CBX4-201ENST00000269397 ZNF804AQ7Z570 1209 aa30.07■■■□□ 2.4
CBX4-201ENST00000269397 LRRC57Q8N9N7 239 aa30.07■■■□□ 2.4
CBX4-201ENST00000269397 RBM46Q8TBY0 533 aaKnown RBP30.07■■■□□ 2.4
CBX4-201ENST00000269397 MTMR4Q9NYA4 1195 aa30.07■■■□□ 2.4
CBX4-201ENST00000269397 LOC102724159A0A0B4J2E5 919 aa30.07■■■□□ 2.4
CBX4-201ENST00000269397 KRIT1O00522 736 aa30.07■■■□□ 2.4
CBX4-201ENST00000269397 CETN3O15182 167 aa30.07■■■□□ 2.4
CBX4-201ENST00000269397 CYP11B2P19099 503 aa30.07■■■□□ 2.4
CBX4-201ENST00000269397 PWP2Q15269 919 aaKnown RBP30.07■■■□□ 2.4
CBX4-201ENST00000269397 DCAF17Q5H9S7 520 aaPredicted RBP30.07■■■□□ 2.4
CBX4-201ENST00000269397 NCAPGQ9BPX3 1015 aa30.07■■■□□ 2.4
CBX4-201ENST00000269397 CELF4Q9BZC1 486 aaKnown RBP30.07■■■□□ 2.4
CBX4-201ENST00000269397 QPCTQ16769 361 aa30.06■■■□□ 2.4
CBX4-201ENST00000269397 FOXR2Q6PJQ5 311 aa30.06■■■□□ 2.4
CBX4-201ENST00000269397 AMIGO3Q86WK7 504 aa30.06■■■□□ 2.4
CBX4-201ENST00000269397 CDCA7Q9BWT1 371 aaPredicted RBP30.06■■■□□ 2.4
CBX4-201ENST00000269397 AKR1B1P15121 316 aa30.06■■■□□ 2.4
CBX4-201ENST00000269397 USP8P40818 1118 aa30.06■■■□□ 2.4
CBX4-201ENST00000269397 MARSP56192 900 aaKnown RBP30.06■■■□□ 2.4
CBX4-201ENST00000269397 CD248Q9HCU0 757 aa30.06■■■□□ 2.4
CBX4-201ENST00000269397 NARFQ9UHQ1 456 aa30.06■■■□□ 2.4
CBX4-201ENST00000269397 AJAP1Q9UKB5 411 aaPredicted RBP30.06■■■□□ 2.4
CBX4-201ENST00000269397 GPR75-ASB3A0A0A6YYF3 556 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 POTEFA5A3E0 1075 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 PGRMC1O00264 195 aaKnown RBP30.05■■■□□ 2.4
CBX4-201ENST00000269397 POTEIP0CG38 1075 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 SEPT2Q15019 361 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 GJB7Q6PEY0 223 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 POTEGQ6S5H5 508 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 POTEEQ6S8J3 1075 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 CCDC13Q8IYE1 715 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 CNOT8Q9UFF9 292 aaKnown RBP30.05■■■□□ 2.4
CBX4-201ENST00000269397 USP17L15C9J2P7 530 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 USP17L13C9JLJ4 530 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 USP17L11C9JVI0 530 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 USP17L18D6R9N7 530 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 USP17L22D6RA61 530 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 USP17L17D6RBQ6 530 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 USP17L19D6RCP7 530 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 USP17L20D6RJB6 530 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 RHBDL3P58872 404 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 USP17L24Q0WX57 530 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 CUL1Q13616 776 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 SPRED3Q2MJR0 410 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 ARSHQ5FYA8 562 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 USP17L6PQ6QN14 398 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 DPP8Q6V1X1 898 aaPredicted RBP30.05■■■□□ 2.4
CBX4-201ENST00000269397 JPH2Q9BR39 696 aaPredicted RBP30.05■■■□□ 2.4
CBX4-201ENST00000269397 PAGR1Q9BTK6 254 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 TRIM31Q9BZY9 425 aa30.05■■■□□ 2.4
CBX4-201ENST00000269397 TCERG1LQ5VWI1 586 aa30.04■■■□□ 2.4
CBX4-201ENST00000269397 PBKQ96KB5 322 aa30.04■■■□□ 2.4
CBX4-201ENST00000269397 DPH5Q9H2P9 285 aa30.04■■■□□ 2.4
CBX4-201ENST00000269397 NOVA2Q9UNW9 492 aaKnown RBP30.04■■■□□ 2.4
CBX4-201ENST00000269397 MYH7BA7E2Y1 1941 aa30.04■■■□□ 2.4
CBX4-201ENST00000269397 MEIS1O00470 390 aa30.04■■■□□ 2.4
CBX4-201ENST00000269397 GNPATO15228 680 aa30.04■■■□□ 2.4
CBX4-201ENST00000269397 TTI1O43156 1089 aa30.04■■■□□ 2.4
CBX4-201ENST00000269397 DPY19L2P1Q6NXN4 242 aa30.04■■■□□ 2.4
CBX4-201ENST00000269397 PEX26Q7Z412 305 aa30.04■■■□□ 2.4
CBX4-201ENST00000269397 TPCN2Q8NHX9 752 aa30.04■■■□□ 2.4
CBX4-201ENST00000269397 ACTRT1Q8TDG2 376 aa30.04■■■□□ 2.4
CBX4-201ENST00000269397 NT5C3AQ9H0P0 336 aa30.04■■■□□ 2.4
CBX4-201ENST00000269397 SLC12A6Q9UHW9 1150 aa30.04■■■□□ 2.4
CBX4-201ENST00000269397 hCG_1984214I3L0E3 225 aa30.03■■■□□ 2.4
CBX4-201ENST00000269397 MED24O75448 989 aa30.03■■■□□ 2.4
CBX4-201ENST00000269397 CLSTN1O94985 981 aa30.03■■■□□ 2.4
CBX4-201ENST00000269397 ASPRV1Q53RT3 343 aa30.03■■■□□ 2.4
CBX4-201ENST00000269397 LRIG3Q6UXM1 1119 aa30.03■■■□□ 2.4
CBX4-201ENST00000269397 YTHDF3Q7Z739 585 aaKnown RBP30.03■■■□□ 2.4
CBX4-201ENST00000269397 ZNF713Q8N859 430 aaPredicted RBP30.03■■■□□ 2.4
CBX4-201ENST00000269397 C1orf131Q8NDD1 294 aaKnown RBP30.03■■■□□ 2.4
CBX4-201ENST00000269397 CUL5Q93034 780 aa30.03■■■□□ 2.4
CBX4-201ENST00000269397 LRRC45Q96CN5 670 aa30.03■■■□□ 2.4
CBX4-201ENST00000269397 BCAS3Q9H6U6 928 aa30.03■■■□□ 2.4
CBX4-201ENST00000269397 DDX20Q9UHI6 824 aaKnown RBP30.03■■■□□ 2.4
CBX4-201ENST00000269397 CDK5RAP2Q96SN8 1893 aa30.03■■■□□ 2.4
CBX4-201ENST00000269397 GMNCA6NCL1 334 aa30.03■■■□□ 2.4
CBX4-201ENST00000269397 PON1P27169 355 aa30.03■■■□□ 2.4
CBX4-201ENST00000269397 ACTN3Q08043 901 aaPredicted RBP30.03■■■□□ 2.4
CBX4-201ENST00000269397 KCTD1Q719H9 257 aa30.03■■■□□ 2.4
CBX4-201ENST00000269397 BUD13Q9BRD0 619 aaKnown RBP eCLIP30.03■■■□□ 2.41e-6■■□□□ 14.5
CBX4-201ENST00000269397 ARMCX3Q9UH62 379 aaPredicted RBP30.03■■■□□ 2.4
CBX4-201ENST00000269397 LEMD3Q9Y2U8 911 aa30.03■■■□□ 2.4
CBX4-201ENST00000269397 WNK3Q9BYP7 1800 aa30.03■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms