RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 IL17AQ16552 155 aa14.37□□□□□ -0.11
SS18-202ENST00000269138 GDF6Q6KF10 455 aaPredicted RBP14.37□□□□□ -0.11
SS18-202ENST00000269138 NFRKBQ6P4R8 1299 aa14.37□□□□□ -0.11
SS18-202ENST00000269138 PLPPR4Q7Z2D5 763 aa14.37□□□□□ -0.11
SS18-202ENST00000269138 ANKRD33Q7Z3H0 272 aa14.37□□□□□ -0.11
SS18-202ENST00000269138 FAM126BQ8IXS8 530 aa14.37□□□□□ -0.11
SS18-202ENST00000269138 ZSCAN16Q9H4T2 348 aaPredicted RBP14.37□□□□□ -0.11
SS18-202ENST00000269138 ZNF302Q9NR11 478 aa14.37□□□□□ -0.11
SS18-202ENST00000269138 TRMT13Q9NUP7 481 aaKnown RBP14.37□□□□□ -0.11
SS18-202ENST00000269138 ERAP1Q9NZ08 941 aa14.37□□□□□ -0.11
SS18-202ENST00000269138 ZNF215Q9UL58 517 aaPredicted RBP14.37□□□□□ -0.11
SS18-202ENST00000269138 CLIC4Q9Y696 253 aa14.37□□□□□ -0.11
SS18-202ENST00000269138 ZNF862O60290 1169 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 B4GALT4O60513 344 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 F13A1P00488 732 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 ANP32AP39687 249 aaKnown RBP14.36□□□□□ -0.11
SS18-202ENST00000269138 TECP42680 631 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 FAAP100Q0VG06 881 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 PLCB4Q15147 1175 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 FOXD4L6Q3SYB3 417 aaPredicted RBP14.36□□□□□ -0.11
SS18-202ENST00000269138 FAM160B1Q5W0V3 765 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 PDXDC2PQ6P474 469 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 FOXD4L3Q6VB84 417 aaPredicted RBP14.36□□□□□ -0.11
SS18-202ENST00000269138 TRMT1LQ7Z2T5 733 aaKnown RBP14.36□□□□□ -0.11
SS18-202ENST00000269138 SH3RF1Q7Z6J0 888 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 C7orf31Q8N865 590 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 RDM1Q8NG50 284 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 AFAP1L1Q8TED9 768 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 MAFBQ9Y5Q3 323 aaPredicted RBP14.36□□□□□ -0.11
SS18-202ENST00000269138 ALPK3Q96L96 1907 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 POTEMA6NI47 508 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 DCDC2CA8MYV0 355 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 BRD1O95696 1058 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 CD4P01730 458 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 ATP2C1P98194 919 aaPredicted RBP14.36□□□□□ -0.11
SS18-202ENST00000269138 EPHA7Q15375 998 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 SF3A1Q15459 793 aaKnown RBP14.36□□□□□ -0.11
SS18-202ENST00000269138 SESTD1Q86VW0 696 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 BANK1Q8NDB2 785 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 TOX2Q96NM4 488 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 CTAGE1Q96RT6 745 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 SETD4Q9NVD3 440 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 RGL1Q9NZL6 768 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 GTF2IRD1Q9UHL9 959 aa14.36□□□□□ -0.11
SS18-202ENST00000269138 RBM19Q9Y4C8 960 aaKnown RBP14.36□□□□□ -0.11
SS18-202ENST00000269138 POTEB3A0JP26 581 aa14.35□□□□□ -0.11
SS18-202ENST00000269138 PDIA4P13667 645 aaKnown RBP14.35□□□□□ -0.11
SS18-202ENST00000269138 CEBPZQ03701 1054 aaKnown RBP14.35□□□□□ -0.11
SS18-202ENST00000269138 PTPN11Q06124 597 aaPredicted RBP14.35□□□□□ -0.11
SS18-202ENST00000269138 POTEBQ6S5H4 581 aa14.35□□□□□ -0.11
SS18-202ENST00000269138 ZBTB10Q96DT7 871 aa14.35□□□□□ -0.11
SS18-202ENST00000269138 DYDC2Q96IM9 177 aa14.35□□□□□ -0.11
SS18-202ENST00000269138 USP28Q96RU2 1077 aa14.35□□□□□ -0.11
SS18-202ENST00000269138 SEZ6LQ9BYH1 1024 aa14.35□□□□□ -0.11
SS18-202ENST00000269138 PDLIM7Q9NR12 457 aa14.35□□□□□ -0.11
SS18-202ENST00000269138 WRAP73Q9P2S5 460 aaPredicted RBP14.35□□□□□ -0.11
SS18-202ENST00000269138 TFIP11Q9UBB9 837 aaKnown RBP14.35□□□□□ -0.11
SS18-202ENST00000269138 DAXXQ9UER7 740 aaPredicted RBP14.35□□□□□ -0.11
SS18-202ENST00000269138 ZMYND8Q9ULU4 1186 aaPredicted RBP14.35□□□□□ -0.11
SS18-202ENST00000269138 IGSF9BQ9UPX0 1349 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 TRIM43BA6NCK2 446 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 STBD1O95210 358 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 CLTBP09497 229 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 CYP2C9P11712 490 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 INSRRP14616 1297 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 SYN1P17600 705 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 HOXC8P31273 242 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 DDIT3P35638 169 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 CYP4A11Q02928 519 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 PPFIA1Q13136 1202 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 CTTNQ14247 550 aaKnown RBP14.34□□□□□ -0.11
SS18-202ENST00000269138 PTPAQ15257 358 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 PTGISQ16647 500 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 CKAP2LQ8IYA6 745 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 ATP8B4Q8TF62 1192 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 LMBR1Q8WVP7 490 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 TRAPPC12Q8WVT3 735 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 TRIM43Q96BQ3 446 aaPredicted RBP14.34□□□□□ -0.11
SS18-202ENST00000269138 CHAMP1Q96JM3 812 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 EIF2AK1Q9BQI3 630 aaKnown RBP14.34□□□□□ -0.11
SS18-202ENST00000269138 PRDM5Q9NQX1 630 aaPredicted RBP14.34□□□□□ -0.11
SS18-202ENST00000269138 TRPC6Q9Y210 931 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 MROH7Q68CQ1 1323 aa14.34□□□□□ -0.11
SS18-202ENST00000269138 C17orf102A2RUQ5 167 aa14.33□□□□□ -0.12
SS18-202ENST00000269138 TMEM150BA6NC51 233 aa14.33□□□□□ -0.12
SS18-202ENST00000269138 LAD1O00515 517 aa14.33□□□□□ -0.12
SS18-202ENST00000269138 TLR3O15455 904 aaKnown RBP14.33□□□□□ -0.12
SS18-202ENST00000269138 TREHO43280 583 aa14.33□□□□□ -0.12
SS18-202ENST00000269138 SLITRK3O94933 977 aa14.33□□□□□ -0.12
SS18-202ENST00000269138 PRPHP41219 470 aa14.33□□□□□ -0.12
SS18-202ENST00000269138 SLC26A2P50443 739 aa14.33□□□□□ -0.12
SS18-202ENST00000269138 FXR2P51116 673 aaKnown RBP eCLIP14.33□□□□□ -0.12
SS18-202ENST00000269138 IGBP1P78318 339 aa14.33□□□□□ -0.12
SS18-202ENST00000269138 ADAM17P78536 824 aa14.33□□□□□ -0.12
SS18-202ENST00000269138 PRKCEQ02156 737 aa14.33□□□□□ -0.12
SS18-202ENST00000269138 GRIK4Q16099 956 aa14.33□□□□□ -0.12
SS18-202ENST00000269138 DTHD1Q6ZMT9 781 aa14.33□□□□□ -0.12
SS18-202ENST00000269138 HSD17B14Q9BPX1 270 aa14.33□□□□□ -0.12
SS18-202ENST00000269138 TMEM39AQ9NV64 488 aa14.33□□□□□ -0.12
SS18-202ENST00000269138 TBX21Q9UL17 535 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms