RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 CPA1P15085 419 aa11.13□□□□□ -0.63
VPS41-201ENST00000265745 ADD1P35611 737 aaKnown RBP11.13□□□□□ -0.63
VPS41-201ENST00000265745 NAPAP54920 295 aa11.13□□□□□ -0.63
VPS41-201ENST00000265745 PLEKHG4Q58EX7 1191 aa11.13□□□□□ -0.63
VPS41-201ENST00000265745 TJAP1Q5JTD0 557 aa11.13□□□□□ -0.63
VPS41-201ENST00000265745 PPP1R18Q6NYC8 613 aa11.13□□□□□ -0.63
VPS41-201ENST00000265745 FBXL16Q8N461 479 aa11.13□□□□□ -0.63
VPS41-201ENST00000265745 ZNF713Q8N859 430 aaPredicted RBP11.13□□□□□ -0.63
VPS41-201ENST00000265745 LMBR1Q8WVP7 490 aa11.13□□□□□ -0.63
VPS41-201ENST00000265745 ATXN2LQ8WWM7 1075 aaKnown RBP11.13□□□□□ -0.63
VPS41-201ENST00000265745 ARNTL2Q8WYA1 636 aa11.13□□□□□ -0.63
VPS41-201ENST00000265745 SYMPKQ92797 1274 aaKnown RBP11.13□□□□□ -0.63
VPS41-201ENST00000265745 MXRA8Q9BRK3 442 aa11.13□□□□□ -0.63
VPS41-201ENST00000265745 ZBED2Q9BTP6 218 aa11.13□□□□□ -0.63
VPS41-201ENST00000265745 OSBPL7Q9BZF2 842 aa11.13□□□□□ -0.63
VPS41-201ENST00000265745 EHMT1Q9H9B1 1298 aa11.13□□□□□ -0.63
VPS41-201ENST00000265745 KCNH7Q9NS40 1196 aa11.13□□□□□ -0.63
VPS41-201ENST00000265745 BARHL2Q9NY43 387 aa11.13□□□□□ -0.63
VPS41-201ENST00000265745 MTCH2Q9Y6C9 303 aa11.13□□□□□ -0.63
VPS41-201ENST00000265745 CHD7Q9P2D1 2997 aa11.13□□□□□ -0.63
VPS41-201ENST00000265745 CCDC196A0A1B0GTZ2 297 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 SMCO2A6NFE2 343 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 LPXNO60711 386 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 CTSHP09668 335 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 ADCY7P51828 1080 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 ARHGAP4P98171 946 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 FGD1P98174 961 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 CEP55Q53EZ4 464 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 FAM26DQ5JW98 314 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.12□□□□□ -0.63
VPS41-201ENST00000265745 SPRED2Q7Z698 418 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 RPAINQ86UA6 219 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 GLG1Q92896 1179 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 JAKMIP1Q96N16 626 aaKnown RBP11.12□□□□□ -0.63
VPS41-201ENST00000265745 ASB2Q96Q27 587 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 GLT8D2Q9H1C3 349 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 SMARCAD1Q9H4L7 1026 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 ERAP1Q9NZ08 941 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 PKD2L1Q9P0L9 805 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 SNX14Q9Y5W7 946 aa11.12□□□□□ -0.63
VPS41-201ENST00000265745 MBLAC1A4D2B0 266 aaPredicted RBP11.11□□□□□ -0.63
VPS41-201ENST00000265745 MEIS1O00470 390 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 CHRNA1P02708 482 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 ARP10275 920 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 MARK3P27448 753 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 CLK2P49760 499 aaKnown RBP11.11□□□□□ -0.63
VPS41-201ENST00000265745 METAP2P50579 478 aaKnown RBP eCLIP11.11□□□□□ -0.63
VPS41-201ENST00000265745 MRPS5P82675 430 aaKnown RBP11.11□□□□□ -0.63
VPS41-201ENST00000265745 APOBRQ0VD83 1088 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 PPFIA1Q13136 1202 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 GRB10Q13322 594 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 PFKFB3Q16875 520 aaPredicted RBP11.11□□□□□ -0.63
VPS41-201ENST00000265745 TAF2Q6P1X5 1199 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 RUFY4Q6ZNE9 571 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 Q6ZUG5 572 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 SEPT8Q92599 483 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 BRF1Q92994 677 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 PGBD1Q96JS3 809 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 PCYT2Q99447 389 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 ANO3Q9BYT9 981 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 AGXT2Q9BYV1 514 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 FAM117AQ9C073 453 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 JPH1Q9HDC5 661 aaPredicted RBP11.11□□□□□ -0.63
VPS41-201ENST00000265745 TMEM260Q9NX78 707 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 THEGQ9P2T0 379 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 SLC9A2Q9UBY0 812 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 NAP1L2Q9ULW6 460 aaPredicted RBP11.11□□□□□ -0.63
VPS41-201ENST00000265745 INSL6Q9Y581 213 aa11.11□□□□□ -0.63
VPS41-201ENST00000265745 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.1□□□□□ -0.63
VPS41-201ENST00000265745 LINC01553A4QN01 128 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 ATMINO43313 823 aaPredicted RBP11.1□□□□□ -0.63
VPS41-201ENST00000265745 REC8O95072 547 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 AMHP03971 560 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 SCG2P13521 617 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 SREBF1P36956 1147 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 ACTR2P61160 394 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 ERVK-21P61565 698 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 HTRA4P83105 476 aaPredicted RBP11.1□□□□□ -0.63
VPS41-201ENST00000265745 ITGB3BPQ13352 177 aaPredicted RBP11.1□□□□□ -0.63
VPS41-201ENST00000265745 AP3B2Q13367 1082 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 GRIK4Q16099 956 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 PKN1Q16512 942 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 MARCH8Q5T0T0 291 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 KRT40Q6A162 431 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 FAM117BQ6P1L5 589 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 BLOC1S2Q6QNY1 142 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 MYOCDQ8IZQ8 938 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 MICALL1Q8N3F8 863 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 TOP1MTQ969P6 601 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 SUGCTQ9HAC7 445 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 AGO4Q9HCK5 861 aaKnown RBP11.1□□□□□ -0.63
VPS41-201ENST00000265745 MYO9BQ13459 2157 aa11.1□□□□□ -0.63
VPS41-201ENST00000265745 NFASCO94856 1347 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 ESYT2A0FGR8 921 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 RRN3P2A6NIE6 340 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 FAM86B1E9PN63 330 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 PRPF3O43395 683 aaKnown RBP11.09□□□□□ -0.63
VPS41-201ENST00000265745 ATG7O95352 703 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 CYP3A4P08684 503 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 FAM86B2P0C5J1 330 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms