RNA–Protein interactions for RNA: ENST00000253754.7

PDLIM4-201, Transcript of PDZ and LIM domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM4, Length 2,282 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-201ENST00000253754 RSPH10BP0C881 870 aa20.66■□□□□ 0.9
PDLIM4-201ENST00000253754 HNRNPH3P31942 346 aaKnown RBP20.66■□□□□ 0.9
PDLIM4-201ENST00000253754 CDK17Q00537 523 aa20.66■□□□□ 0.9
PDLIM4-201ENST00000253754 SFR1Q86XK3 245 aa20.66■□□□□ 0.9
PDLIM4-201ENST00000253754 FAM20AQ96MK3 541 aa20.66■□□□□ 0.9
PDLIM4-201ENST00000253754 PNKPQ96T60 521 aa20.66■□□□□ 0.9
PDLIM4-201ENST00000253754 CRACR2AQ9BSW2 395 aa20.66■□□□□ 0.9
PDLIM4-201ENST00000253754 ATAD5Q96QE3 1844 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 KRT86O43790 486 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 EIF4A3P38919 411 aaKnown RBP20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 WHAMMP3Q1A5X7 153 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 MCTP2Q6DN12 878 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 TRAPPC11Q7Z392 1133 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 SYT2Q8N9I0 419 aaPredicted RBP20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 BHMT2Q9H2M3 363 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 FBXO28Q9NVF7 368 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 PIK3CDO00329 1044 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 CHMP2AO43633 222 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 TBC1D8O95759 1140 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 RHOXF2BP0C7M4 288 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 PLA2G4AP47712 749 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 TUBB2AQ13885 445 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 FOXR2Q6PJQ5 311 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 NOA1Q8NC60 698 aaKnown RBP20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 EIF2AK1Q9BQI3 630 aaKnown RBP20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 RHOXF2Q9BQY4 288 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 TUBB2BQ9BVA1 445 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 RUSC1Q9BVN2 902 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 NLRC4Q9NPP4 1024 aa20.65■□□□□ 0.9
PDLIM4-201ENST00000253754 MYBP10242 640 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 HOXA7P31268 230 aaPredicted RBP20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 KIF11P52732 1056 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 NEK11Q8NG66 645 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 ZNF341Q9BYN7 854 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 VCPKMTQ9H867 229 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 PRDM4Q9UKN5 801 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 FZD1Q9UP38 647 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 PITPNM2Q9BZ72 1349 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 CTAGE15A4D2H0 777 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 SLC26A4O43511 780 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 NOL4O94818 638 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 CYP3A4P08684 503 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 CTAGE8P0CG41 777 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 INPP5BP32019 993 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 HOXD13P35453 343 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 VAV2P52735 878 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 ADAM9Q13443 819 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 CTTNQ14247 550 aaKnown RBP20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 ZNF662Q6ZS27 426 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 CTAGE6Q86UF2 777 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 CTAGE4Q8IX94 777 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 IQCDQ96DY2 449 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 CEP63Q96MT8 703 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 SH2D4AQ9H788 454 aa20.64■□□□□ 0.89
PDLIM4-201ENST00000253754 CTNND1O60716 968 aaKnown RBP20.63■□□□□ 0.89
PDLIM4-201ENST00000253754 SPA17Q15506 151 aa20.63■□□□□ 0.89
PDLIM4-201ENST00000253754 PDXDC1Q6P996 788 aa20.63■□□□□ 0.89
PDLIM4-201ENST00000253754 CACNA2D4Q7Z3S7 1137 aa20.63■□□□□ 0.89
PDLIM4-201ENST00000253754 TRIM59Q8IWR1 403 aa20.63■□□□□ 0.89
PDLIM4-201ENST00000253754 PIGOQ8TEQ8 1089 aa20.63■□□□□ 0.89
PDLIM4-201ENST00000253754 LSM14BQ9BX40 385 aaKnown RBP20.63■□□□□ 0.89
PDLIM4-201ENST00000253754 IFIH1Q9BYX4 1025 aaKnown RBP20.63■□□□□ 0.89
PDLIM4-201ENST00000253754 DEF6Q9H4E7 631 aa20.63■□□□□ 0.89
PDLIM4-201ENST00000253754 ZBTB39O15060 712 aa20.62■□□□□ 0.89
PDLIM4-201ENST00000253754 PRPF6O94906 941 aaKnown RBP20.62■□□□□ 0.89
PDLIM4-201ENST00000253754 DCAF15Q66K64 600 aa20.62■□□□□ 0.89
PDLIM4-201ENST00000253754 CAPZA3Q96KX2 299 aa20.62■□□□□ 0.89
PDLIM4-201ENST00000253754 RANBP17Q9H2T7 1088 aaKnown RBP20.62■□□□□ 0.89
PDLIM4-201ENST00000253754 MLXIPQ9HAP2 919 aa20.62■□□□□ 0.89
PDLIM4-201ENST00000253754 PCDHA13Q9Y5I0 950 aa20.62■□□□□ 0.89
PDLIM4-201ENST00000253754 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.62■□□□□ 0.89
PDLIM4-201ENST00000253754 NR2F2P24468 414 aa20.62■□□□□ 0.89
PDLIM4-201ENST00000253754 KIF5AQ12840 1032 aa20.62■□□□□ 0.89
PDLIM4-201ENST00000253754 PURBQ96QR8 312 aaKnown RBP20.62■□□□□ 0.89
PDLIM4-201ENST00000253754 SFI1A8K8P3 1242 aa20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 GCOM1H8Y6P7 765 aaPredicted RBP20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 POLR2MP0CAP2 368 aa20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 GFPT1Q06210 699 aaPredicted RBP20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 ARFGAP3Q9NP61 516 aa20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 SAR1BQ9Y6B6 198 aa20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 AKR1B10O60218 316 aa20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 KCNA1Q09470 495 aa20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 EHBP1Q8NDI1 1231 aa20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 SECISBP2LQ93073 1101 aaKnown RBP20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 ZKSCAN4Q969J2 545 aaPredicted RBP20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 MMS19Q96T76 1030 aa20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 IKZF4Q9H2S9 585 aa20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 ADARB2Q9NS39 739 aaKnown RBP20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 RNF216Q9NWF9 866 aaPredicted RBP20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 RABGAP1Q9Y3P9 1069 aa20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 CAPN6Q9Y6Q1 641 aa20.61■□□□□ 0.89
PDLIM4-201ENST00000253754 ZNF185O15231 689 aa20.6■□□□□ 0.89
PDLIM4-201ENST00000253754 TLR2O60603 784 aa20.6■□□□□ 0.89
PDLIM4-201ENST00000253754 POLR2FP61218 127 aaKnown RBP20.6■□□□□ 0.89
PDLIM4-201ENST00000253754 DMTNQ08495 405 aa20.6■□□□□ 0.89
PDLIM4-201ENST00000253754 LRCH2Q5VUJ6 765 aa20.6■□□□□ 0.89
PDLIM4-201ENST00000253754 PAPD7Q5XG87 772 aaKnown RBP20.6■□□□□ 0.89
PDLIM4-201ENST00000253754 HGSNATQ68CP4 663 aa20.6■□□□□ 0.89
PDLIM4-201ENST00000253754 OTOP1Q7RTM1 612 aa20.6■□□□□ 0.89
PDLIM4-201ENST00000253754 TPH2Q8IWU9 490 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms